Overview

table1
table2

Table 1. Organisms and genome versions.
Organism Genome version
Amaranthus hypochondriacus v1.0
Amborella trichopoda v1.0
Ananas comosus v3
Aquilegia coerulea v3.1
Arabidopsis halleri v1.1
Arabidopsis lyrata v2.1
Arabidopsis thaliana TAIR10
Boea hygrometrica GCA_001598015.1
Boechera stricta v1.2
Brachypodium distachyon v3.1
Brachypodium stacei v1.1
Brassica oleracea capitata V1.0
Brassica rapa FPsc
Capsella grandiflora v1.1
Capsella rubella v1.0
Carica papaya ASGPBv0.4
Citrus clementenina v1.0
Citrus sinensis v1.1
Cucumis sativus v1.0
Daucus carota v2.0
Eucalyptus grandis v2.0
Eutrema salsugineum v1.0
Fragaria vesca v1.1
Glycine max Wm82.a2.v1
Gossypium raimondii v2.1
Kalanchoe fedtschenkoi v1.1
Kalanchoe laxiflora v1.1
Linum usitatissimum v1.0
Malus domestica v1.0
Manihot esculenta v6.1
Medicago truncatula Mt4.0v1
Mimulus guttatus v2.0
Musa acuminata v1
Oropetium thomaeum v1.0
Oryza sativa v7_JGI
Panicum hallii v2.0
Panicum virgatum v1.1
Phaseolus vulgaris v2.1
Populus trichocarpa v3.0
Prunus persica v2.1
Ricinus communis v0.1
Salix purpurea v1.0
Setaria italica v2.2
Setaria viridis v1.1
Solanum lycopersicum iTAG2.4
Solanum tuberosum v4.03
Sorghum bicolor v3.1.1
Spirodela polyrhiza v2
Theobroma cacao v1.1
Trifolium pratense v2
Vitis vinifera Genoscope.12X
Zea mays 284_AGPv3
Zostera marina v2.2
TOTAL 53

Table 2. RNA-seq data.
Organism* GEO series GEO samples SRA Condition Tissue Date
Arabidopsis thaliana GSE85653 GSM2280286 SRR4033018 Heat stress rep1 leaves May-30-2018
Arabidopsis thaliana GSE85653 GSM2280287 SRR4033019 Heat stress rep2 leaves May-30-2018
Arabidopsis thaliana GSE85653 GSM2280288 SRR4033020 Heat stress rep3 leaves May-30-2018
Arabidopsis thaliana GSE93979 GSM2466002 SRR5196729 WT drought rep1 leaf Jun-13-2017
Arabidopsis thaliana GSE93979 GSM2466003 SRR5196730 WT drought rep1 leaf Jun-13-2017
Arabidopsis thaliana GSE93420 GSM2453038 SRR5167847 WT_dehydration1 leaf Apr-11-2017
Arabidopsis thaliana GSE93420 GSM2453039 SRR5167848 WT_dehydration2 leaf Apr-11-2017
Arabidopsis thaliana GSE93420 GSM2453040 SRR5167849 WT_dehydration3 leaf Apr-11-2017
Arabidopsis thaliana GSE94015 GSM2467113 SRR5197907 WT RL3h rep1 heat stress (treated at 37C for 3h) rosette leaves at flower stages 1-9 Mar-15-2017
Arabidopsis thaliana GSE94015 GSM2467114 SRR5197908 WT RL3h rep2 heat stress (treated at 37C for 3h) rosette leaves at flower stages 1-9 Mar-15-2017
Arabidopsis thaliana GSE94015 GSM2467115 SRR5197909 WT RL3h rep3 heat stress (treated at 37C for 3h) rosette leaves at flower stages 1-9 Mar-15-2017
Arabidopsis thaliana GSE72806 GSM1872392 SRR2302914 Col h-1R heat stress (44oC for 1h) leaves Oct-24-2016
Arabidopsis thaliana GSE72806 GSM1872393 SRR2302915 Col h-2R heat stress (44oC for 1h) leaves Oct-24-2016
Arabidopsis thaliana GSE72806 GSM1872394 SRR2302916 Col h-3R heat stress (44oC for 1h) leaves Oct-24-2016
Arabidopsis thaliana GSE72806 GSM1872389 SRR2302911 Col s-1R salinity stress leaves Oct-24-2016
Arabidopsis thaliana GSE72806 GSM1872390 SRR2302912 Col s-2R salinity stress leaves Oct-24-2016
Arabidopsis thaliana GSE72806 GSM1872391 SRR2302913 Col s-3R salinity stress leaves Oct-24-2016
Oryza sativa GSE101734 GSM2714235 SRR5856930 Salt Seedling leaf Jul-22-2017
Oryza sativa GSE101734 GSM2714236 SRR5856931 Salt Seedling leaf Jul-22-2017
Oryza sativa GSE101734 GSM2714237 SRR5856932 Salt Seedling leaf Jul-22-2017
Oryza sativa GSE77510 GSM2053502 SRR3140959 Heat stress (45oC) - 12h leaf Dec-21-2017
Oryza sativa GSE78972 GSM2082859 SRR3209771 Long Day Drought_S3 leaf Mar-01-2017
Oryza sativa GSE78972 GSM2082860 SRR3209772 Long Day Drought_S4 leaf Mar-01-2017
Oryza sativa GSE78972 GSM2082863 SRR3209775 Short Day Drought_S7 leaf Mar-01-2017
Oryza sativa GSE78972 GSM2082864 SRR3209776 Short Day Drought_S8 leaf Mar-01-2017
Oryza sativa GSE78972 GSM2082866 SRR3209778 Long Day Drought_S10 leaf Mar-01-2017
Oryza sativa GSE78972 GSM2082868 SRR3209780 Short Day Drought_S12 leaf Mar-01-2017
Oryza sativa GSE80811 GSM2137964 SRR3466960 drought - 1 d leaves Feb-14-2017
Oryza sativa GSE80811 GSM2137964 SRR3466961 drought - 1 d leaves Feb-14-2017
Oryza sativa GSE80811 GSM2137965 SRR3466962 drought - 2 d leaves Feb-14-2017
Oryza sativa GSE80811 GSM2137965 SRR3466963 drought - 2 d leaves Feb-14-2017
Oryza sativa GSE80811 GSM2137966 SRR3466964 drought - 3 d leaves Feb-14-2017
Oryza sativa GSE80811 GSM2137966 SRR3466965 drought - 3 d leaves Feb-14-2017
Oryza sativa GSE95668 GSM2520922 SRR5311340 heat - 35oC - 6h leaf Nov-07-2017
Oryza sativa GSE95668 GSM2520923 SRR5311341 heat - 35oC - 6h leaf Nov-07-2017
Zea mays GSE71723 GSM1843772 SRR2144414 drought leaf V12 Feb-04-2016
Zea mays GSE71723 GSM1843780 SRR2144422 drought leaf V14 Feb-04-2016
Zea mays GSE71723 GSM1843788 SRR2144430 drought leaf V16 Feb-04-2016
Zea mays GSE71723 GSM1843796 SRR2144438 drought leaf R1 Feb-04-2016
Zea mays GSE71377 GSM1833214 SRR2129983 drought leaf Jan-22-2016
Zea mays GSE71046 GSM1826061 SRR2106186 wt Salt T7 Rep1 youngest wrapped leaf Jan-14-2016
Zea mays GSE71046 GSM1826073 SRR2106198 wt Salt T0 Rep2+Rep3 youngest wrapped leaf Jan-14-2016
Zea mays GSE71046 GSM1826077 SRR2106202 wt Salt T7 Rep2+Rep3 youngest wrapped leaf Jan-14-2016
Glycine max GSE98958 GSM2628302 SRR5569810 dehydrated leaf May-31-2018
Glycine max GSE98958 GSM2628302 SRR5569811 dehydrated leaf May-31-2018
Glycine max GSE98958 GSM2628303 SRR5569812 dehydrated leaf May-31-2018
Glycine max GSE98958 GSM2628303 SRR5569813 dehydrated leaf May-31-2018
Glycine max GSE69571 GSM1704043 SRR2051086 salt stress leaves Jul-11-2017
Glycine max GSE69571 GSM1704044 SRR2051087 salt stress leaves Jul-11-2017
Glycine max GSE69571 GSM1704045 SRR2051088 salt stress leaves Jul-11-2017
Glycine max GSE69571 GSM1704046 SRR2051089 salt stress leaves Jul-11-2017
Glycine max GSE70310 GSM1723542 SRR2079645 drought (15 days) leaf r2 stage Aug-31-2015
Glycine max GSE70310 GSM1723542 SRR2079646 drought (15 days) leaf r2 stage Aug-31-2015
Glycine max GSE70310 GSM1723542 SRR2079647 drought (15 days) leaf r2 stage Aug-31-2015
Glycine max GSE69469 GSM1701586 SRR2048167 drought (3 days ZT0-8h R1) leaves v1 stage Jul-07-2015
Glycine max GSE69469 GSM1701592 SRR2048173 drought (3 days ZT4-12h R1) leaves v1 stage Jul-07-2015
Glycine max GSE69469 GSM1701598 SRR2048179 drought (3 days ZT8-16h R1) leaves v1 stage Jul-07-2015
Glycine max GSE69469 GSM1701604 SRR2048185 drought (3 days ZT12-20h R1) leaves v1 stage Jul-07-2015
Glycine max GSE69469 GSM1701610 SRR2048191 drought (3 days ZT16-24h R1) leaves v1 stage Jul-07-2015
Glycine max GSE69469 GSM1701616 SRR2048197 drought (3 days ZT20-4h R1) leaves v1 stage Jul-07-2015
* Gma (Glycine max), Zma (Zea mays), (Ath) Arabidopsis thaliana and Osa (Oryza sativa)