@article{10.1093/gigascience/giaa021,
    author = {Rosen, Benjamin D and Bickhart, Derek M and Schnabel, Robert D and Koren, Sergey and Elsik, Christine G and Tseng, Elizabeth and Rowan, Troy N and Low, Wai Y and Zimin, Aleksey and Couldrey, Christine and Hall, Richard and Li, Wenli and Rhie, Arang and Ghurye, Jay and McKay, Stephanie D and Thibaud-Nissen, Françoise and Hoffman, Jinna and Murdoch, Brenda M and Snelling, Warren M and McDaneld, Tara G and Hammond, John A and Schwartz, John C and Nandolo, Wilson and Hagen, Darren E and Dreischer, Christian and Schultheiss, Sebastian J and Schroeder, Steven G and Phillippy, Adam M and Cole, John B and Van Tassell, Curtis P and Liu, George and Smith, Timothy P L and Medrano, Juan F},
    title = "{De novo assembly of the cattle reference genome with single-molecule sequencing}",
    journal = {GigaScience},
    volume = {9},
    number = {3},
    year = {2020},
    month = {03},
    abstract = "{Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10–12 years. These tools depend upon the Bos taurus reference genome (UMD3.1.1), which was created using now-outdated technologies and is hindered by a variety of deficiencies and inaccuracies.We present the new reference genome for cattle, ARS-UCD1.2, based on the same animal as the original to facilitate transfer and interpretation of results obtained from the earlier version, but applying a combination of modern technologies in a de novo assembly to increase continuity, accuracy, and completeness. The assembly includes 2.7 Gb and is \\>250× more continuous than the original assembly, with contig N50 \\>25 Mb and L50 of 32. We also greatly expanded supporting RNA-based data for annotation that identifies 30,396 total genes (21,039 protein coding). The new reference assembly is accessible in annotated form for public use.We demonstrate that improved continuity of assembled sequence warrants the adoption of ARS-UCD1.2 as the new cattle reference genome and that increased assembly accuracy will benefit future research on this species.}",
    issn = {2047-217X},
    doi = {10.1093/gigascience/giaa021},
    url = {https://doi.org/10.1093/gigascience/giaa021},
    note = {giaa021},
    eprint = {https://academic.oup.com/gigascience/article-pdf/9/3/giaa021/32932931/giaa021.pdf
},

@article{Poleti_2018,
	doi = {10.1016/j.dib.2018.06.004},
	url = {https://doi.org/10.1016/j.dib.2018.06.004},
	year = 2018,
	month = {aug},
	publisher = {Elsevier {BV}},
	volume = {19},
	pages = {1314--1317},
	author = {Mirele D. Poleti and Luciana C.A. Regitano and Gustavo H.M.F. Souza and Aline S.M. Cesar and Rosineide C. Simas and Bárbara Silva-Vignato and Gabriella B. Oliveira and Sônia C.S. Andrade and Luiz C. Cameron and Luiz L. Coutinho},
	title = {Data from proteomic analysis of bovine Longissimus dorsi muscle associated with intramuscular fat content},
	journal = {Data in Brief}
}



@article{De_Oliveira_2018,
	doi = {10.1038/s41598-018-35315-5},
	url = {https://doi.org/10.1038/s41598-018-35315-5},
	year = 2018,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {8},
	number = {1},
	author = {Priscila S. N. De Oliveira and Luiz L. Coutinho and Polyana C. Tizioto and Aline S. M. Cesar and Gabriella B. de Oliveira and Wellison J. da S. Diniz and Andressa O. De Lima and James M. Reecy and Gerson B. Mourão and Adhemar Zerlotini and Luciana C. A. Regitano},
	title = {An integrative transcriptome analysis indicates regulatory {mRNA}-{miRNA} networks for residual feed intake in Nelore cattle},
	journal = {Sci Rep}
}



@article{Afonso_2019,
	doi = {10.1038/s41598-019-49089-x},
	url = {https://doi.org/10.1038/s41598-019-49089-x},
	year = 2019,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {9},
	number = {1},
	author = {Juliana Afonso and Luiz Lehmann Coutinho and Polyana Cristine Tizioto and Wellison Jarles da Silva Diniz and Andressa Oliveira de Lima and Marina Ibelli Pereira Rocha and Carlos Eduardo Buss and Bruno Gabriel Nascimento Andrade and Otávio Piaya and Juliana Virginio da Silva and Laura Albuquerque Lins and Caio Fernando Gromboni and Ana Rita Araújo Nogueira and Marina Rufino Salinas Fortes and Gerson Barreto Mourao and Luciana Correia de Almeida Regitano},
	title = {Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus},
	journal = {Sci Rep}
}



@article{Tizioto_2016,
	doi = {10.1038/srep39493},
	url = {https://doi.org/10.1038/srep39493},
	year = 2016,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {6},
	number = {1},
	author = {Polyana C. Tizioto and Luiz L. Coutinho and Priscila S. N. Oliveira and Aline S. M. Cesar and Wellison J. S. Diniz and Andressa O. Lima and Marina I. Rocha and Jared E. Decker and Robert D. Schnabel and Gerson B. Mourão and Rymer R. Tullio and Adhemar Zerlotini and Jeremy F. Taylor and Luciana C. A. Regitano},
	title = {Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake},
	journal = {Sci Rep}
}



@article{Tizioto_2015,
	doi = {10.1186/s12864-015-1464-x},
	url = {https://doi.org/10.1186/s12864-015-1464-x},
	year = 2015,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Polyana C Tizioto and Luiz L Coutinho and Jared E Decker and Robert D Schnabel and Kamila O Rosa and Priscila SN Oliveira and Marcela M Souza and Gerson B Mourão and Rymer R Tullio and Amália S Chaves and Dante PD Lanna and Adhemar Zerlotini-Neto and Mauricio A Mudadu and Jeremy F Taylor and Luciana CA Regitano},
	title = {Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes},
	journal = {BMC Genomics}
}



@article{Cesar_2016,
	doi = {10.1186/s12864-016-3306-x},
	url = {https://doi.org/10.1186/s12864-016-3306-x},
	year = 2016,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {Aline S. M. Cesar and Luciana C. A. Regitano and Mirele D. Poleti and Sônia C. S. Andrade and Polyana C. Tizioto and Priscila S. N. Oliveira and Andrezza M. Felício and Michele L. do Nascimento and Amália S. Chaves and Dante P. D. Lanna and Rymer R. Tullio and Renata T. Nassu and James E. Koltes and Eric Fritz-Waters and Gerson B. Mourão and Adhemar Zerlotini-Neto and James M. Reecy and Luiz L Coutinho},
	title = {Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content},
	journal = {BMC Genomics}
}



@article{Silva_Vignato_2017,
	doi = {10.1186/s12864-017-3897-x},
	url = {https://doi.org/10.1186/s12864-017-3897-x},
	year = 2017,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {18},
	number = {1},
	author = {Bárbara Silva-Vignato and Luiz L. Coutinho and Aline S. M. Cesar and Mirele D. Poleti and Luciana C. A. Regitano and Júlio C. C. Balieiro},
	title = {Comparative muscle transcriptome associated with carcass traits of Nellore cattle},
	journal = {BMC Genomics}
}



@article{Oliveira_2018,
	doi = {10.1186/s12864-018-4514-3},
	url = {https://doi.org/10.1186/s12864-018-4514-3},
	year = 2018,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Gabriella B. Oliveira and Luciana C. A. Regitano and Aline S. M. Cesar and James M. Reecy and Karina Y. Degaki and Mirele D. Poleti and Andrezza M. Felício and James E. Koltes and Luiz L. Coutinho},
	title = {Integrative analysis of {microRNAs} and {mRNAs} revealed regulation of composition and metabolism in Nelore cattle},
	journal = {BMC Genomics}
}



@article{Silva_Vignato_2019,
	doi = {10.1186/s12864-018-5345-y},
	url = {https://doi.org/10.1186/s12864-018-5345-y},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Bárbara Silva-Vignato and Luiz L. Coutinho and Mirele D. Poleti and Aline S. M. Cesar and Cristina T. Moncau and Luciana C. A. Regitano and Júlio C. C. Balieiro},
	title = {Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle},
	journal = {BMC Genomics}
}



@article{Kappeler_2019,
	doi = {10.1186/s12867-018-0118-3},
	url = {https://doi.org/10.1186/s12867-018-0118-3},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Berna I. G. Kappeler and Luciana C. A. Regitano and Mirele D. Poleti and Aline S. M. Cesar and Gabriel C. M. Moreira and Gustavo Gasparin and Luiz L. Coutinho},
	title = {{MiRNAs} differentially expressed in skeletal muscle of animals with divergent estimated breeding values for beef tenderness},
	journal = {BMC Molecular Biol}
}



@article{Cesar_2015,
	doi = {10.1371/journal.pone.0128350},
	url = {https://doi.org/10.1371/journal.pone.0128350},
	year = 2015,
	month = {jun},
	publisher = {Public Library of Science ({PLoS})},
	volume = {10},
	number = {6},
	pages = {e0128350},
	author = {Aline S. M. Cesar and Luciana C. A. Regitano and James E. Koltes and Eric R. Fritz-Waters and Dante P. D. Lanna and Gustavo Gasparin and Gerson B. Mourão and Priscila S. N. Oliveira and James M. Reecy and Luiz L. Coutinho},
	editor = {Roberta Davoli},
	title = {Putative Regulatory Factors Associated with Intramuscular Fat Content},
	journal = {PLoS ONE}
}



@article{Diniz_2016,
	doi = {10.1371/journal.pone.0161160},
	url = {https://doi.org/10.1371/journal.pone.0161160},
	year = 2016,
	month = {aug},
	publisher = {Public Library of Science ({PLoS})},
	volume = {11},
	number = {8},
	pages = {e0161160},
	author = {Wellison Jarles da Silva Diniz and Luiz Lehmann Coutinho and Polyana Cristine Tizioto and Aline Silva Mello Cesar and Caio Fernando Gromboni and Ana Rita Araújo Nogueira and Priscila Silva Neubern de Oliveira and Marcela Maria de Souza and Luciana Correia de Almeida Regitano},
	editor = {Stephen L. Clarke},
	title = {Iron Content Affects Lipogenic Gene Expression in the Muscle of Nelore Beef Cattle},
	journal = {PLoS ONE}
}



@article{Gon_alves_2018,
	doi = {10.3389/fgene.2018.00441},
	url = {https://doi.org/10.3389/fgene.2018.00441},
	year = 2018,
	month = {oct},
	publisher = {Frontiers Media {SA}},
	volume = {9},
	author = {Tássia Mangetti Gonçalves and Luciana Correia de Almeida Regitano and James E. Koltes and Aline Silva Mello Cesar and Sônia Cristina da Silva Andrade and Gerson Barreto Mourão and Gustavo Gasparin and Gabriel Costa Monteiro Moreira and Elyn Fritz-Waters and James M. Reecy and Luiz Lehmann Coutinho},
	title = {Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle},
	journal = {Front. Genet.}
}



@article{Diniz_2019,
	doi = {10.3389/fgene.2019.00210},
	url = {https://doi.org/10.3389/fgene.2019.00210},
	year = 2019,
	month = {mar},
	publisher = {Frontiers Media {SA}},
	volume = {10},
	author = {Wellison J. S. Diniz and Gianluca Mazzoni and Luiz L. Coutinho and Priyanka Banerjee and Ludwig Geistlinger and Aline S. M. Cesar and Francesca Bertolini and Juliana Afonso and Priscila S. N. de Oliveira and Polyana C. Tizioto and Haja N. Kadarmideen and Luciana C. A. Regitano},
	title = {Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle},
	journal = {Front. Genet.}
}



@article{de_Oliveira_2019,
	doi = {10.3389/fgene.2019.00651},
	url = {https://doi.org/10.3389/fgene.2019.00651},
	year = 2019,
	month = {jul},
	publisher = {Frontiers Media {SA}},
	volume = {10},
	author = {Priscila S.N. de Oliveira and Luiz L. Coutinho and Aline S.M. Cesar and Wellison J. da Silva Diniz and Marcela M. de Souza and Bruno G. Andrade and James E. Koltes and Gerson B. Mourão and Adhemar Zerlotini and James M. Reecy and Luciana C.A. Regitano},
	title = {Co-Expression Networks Reveal Potential Regulatory Roles of {miRNAs} in Fatty Acid Composition of Nelore Cattle},
	journal = {Front. Genet.}
}



@article{de_Lima_2020,
	doi = {10.3389/fgene.2020.00189},
	url = {https://doi.org/10.3389/fgene.2020.00189},
	year = 2020,
	month = {mar},
	publisher = {Frontiers Media {SA}},
	volume = {11},
	author = {Andressa O. de Lima and James E. Koltes and Wellison J. S. Diniz and Priscila S. N. de Oliveira and Aline S. M. Cesar and Polyana C. Tizioto and Juliana Afonso and Marcela M. de Souza and Juliana Petrini and Marina I. P. Rocha and Tainã F. Cardoso and Adhemar Zerlotini Neto and Luiz L. Coutinho and Gerson B. Mourão and Luciana C. A. Regitano},
	title = {Potential Biomarkers for Feed Efficiency-Related Traits in Nelore Cattle Identified by Co-expression Network and Integrative Genomics Analyses},
	journal = {Front. Genet.}
}




@article{Keele_2016,
	doi = {10.2527/jas.2015-9887},
	url = {https://doi.org/10.2527%2Fjas.2015-9887},
	year = 2016,
	month = {feb},
	publisher = {Oxford University Press ({OUP})},
	volume = {94},
	number = {2},
	pages = {490--499},
	author = {J. W. Keele and L. A. Kuehn and T. G. McDaneld and R. G. Tait and S. A. Jones and B. N. Keel and W. M. Snelling},
	title = {Genomewide association study of liver abscess in beef cattle1,2},
	journal = {Journal of Animal Science}
}



@article{Lee_2020,
	doi = {10.1080/10495398.2020.1856124},
	url = {https://doi.org/10.1080%2F10495398.2020.1856124},
	year = 2020,
	month = {dec},
	publisher = {Informa {UK} Limited},
	pages = {1--6},
	author = {Seung-Hwan Lee and Dooho Lee and Mingyung Lee and Seung-Heui Ryoo and Seongwon Seo and Inchul Choi},
	title = {Analysis of single nucleotide polymorphisms related to heifer fertility in Hanwoo (Korean cattle)},
	journal = {Animal Biotechnology}
}



@article{Sharma_2006,
	doi = {10.3168/jds.s0022-0302(06)72402-x},
	url = {https://doi.org/10.3168%2Fjds.s0022-0302%2806%2972402-x},
	year = 2006,
	month = {sep},
	publisher = {American Dairy Science Association},
	volume = {89},
	number = {9},
	pages = {3626--3635},
	author = {B.S. Sharma and I. Leyva and F. Schenkel and N.A. Karrow},
	title = {Association of Toll-Like Receptor 4 Polymorphisms with Somatic Cell Score and Lactation Persistency in Holstein Bulls},
	journal = {Journal of Dairy Science}
}



@article{Kolbehdari_2008,
	doi = {10.3168/jds.2007-0585},
	url = {https://doi.org/10.3168%2Fjds.2007-0585},
	year = 2008,
	month = {jul},
	publisher = {American Dairy Science Association},
	volume = {91},
	number = {7},
	pages = {2844--2856},
	author = {D. Kolbehdari and Z. Wang and J.R. Grant and B. Murdoch and A. Prasad and Z. Xiu and E. Marques and P. Stothard and S.S. Moore},
	title = {A Whole-Genome Scan to Map Quantitative Trait Loci for Conformation and Functional Traits in Canadian Holstein Bulls},
	journal = {Journal of Dairy Science}
}



@article{Garrett_2008,
	doi = {10.2527/jas.2008-0990},
	url = {https://doi.org/10.2527%2Fjas.2008-0990},
	year = 2008,
	month = {dec},
	publisher = {Oxford University Press ({OUP})},
	volume = {86},
	number = {12},
	pages = {3315--3323},
	author = {A. J. Garrett and G. Rincon and J. F. Medrano and M. A. Elzo and G. A. Silver and M. G. Thomas},
	title = {Promoter region of the bovine growth hormone receptor gene: Single nucleotide polymorphism discovery in cattle and association with performance in Brangus bulls1},
	journal = {Journal of Animal Science}
}



@article{Rinc_n_2009,
	doi = {10.3168/jds.2008-1395},
	url = {https://doi.org/10.3168%2Fjds.2008-1395},
	year = 2009,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {92},
	number = {2},
	pages = {758--764},
	author = {G. Rinc{\'{o}}n and A. Islas-Trejo and J. Casellas and Y. Ronin and M. Soller and E. Lipkin and J.F. Medrano},
	title = {Fine mapping and association analysis of a quantitative trait locus for milk production traits on Bos taurus autosome 4},
	journal = {Journal of Dairy Science}
}



@article{Kim_2009,
	doi = {10.1111/j.1365-2052.2008.01832.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2008.01832.x},
	year = 2009,
	month = {jun},
	publisher = {Wiley},
	volume = {40},
	number = {3},
	pages = {300--307},
	author = {E.-S. Kim and P. J. Berger and B. W. Kirkpatrick},
	title = {Genome-wide scan for bovine twinning rate {QTL} using linkage disequilibrium},
	journal = {Animal Genetics}
}



@article{Marques_2009,
	doi = {10.2527/jas.2008-1456},
	url = {https://doi.org/10.2527%2Fjas.2008-1456},
	year = 2009,
	month = {aug},
	publisher = {Oxford University Press ({OUP})},
	volume = {87},
	number = {8},
	pages = {2475--2484},
	author = {E. Marques and J. D. Nkrumah and E. L. Sherman and S. S. Moore},
	title = {Polymorphisms in positional candidate genes on {BTA}14 and {BTA}26 affect carcass quality in beef cattle},
	journal = {Journal of Animal Science}
}



@article{Settles_2009,
	doi = {10.1111/j.1365-2052.2009.01896.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2009.01896.x},
	year = 2009,
	month = {oct},
	publisher = {Wiley},
	volume = {40},
	number = {5},
	pages = {655--662},
	author = {M. Settles and R. Zanella and S. D. McKay and R. D. Schnabel and J. F. Taylor and R. Whitlock and Y. Schukken and J. S. Van Kessel and J. M. Smith and H. Neibergs},
	title = {A whole genome association analysis identifies loci associated {withMycobacterium} aviumsubsp.paratuberculosisinfection status in {US} holstein cattle},
	journal = {Animal Genetics}
}



@article{Verschoor_2009,
	doi = {10.1007/s00335-009-9198-1},
	url = {https://doi.org/10.1007%2Fs00335-009-9198-1},
	year = 2009,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {7},
	pages = {447--454},
	author = {Chris P. Verschoor and Sameer D. Pant and Flavio S. Schenkel and Bhawani S. Sharma and Niel A. Karrow},
	title = {{SNPs} in the bovine {IL}-10 receptor are associated with somatic cell score in Canadian dairy bulls},
	journal = {Mamm Genome}
}



@article{Kolbehdari_2009,
	doi = {10.1111/j.1439-0388.2008.00793.x},
	url = {https://doi.org/10.1111%2Fj.1439-0388.2008.00793.x},
	year = 2009,
	month = {jun},
	publisher = {Wiley},
	volume = {126},
	number = {3},
	pages = {216--227},
	author = {D. Kolbehdari and Z. Wang and J.R. Grant and B. Murdoch and A. Prasad and Z. Xiu and E. Marques and P. Stothard and S.S. Moore},
	title = {A whole genome scan to map {QTL} for milk production traits and somatic cell score in Canadian Holstein bulls},
	journal = {Journal of Animal Breeding and Genetics}
}



@article{Sherman_2010,
	doi = {10.2527/jas.2008-1759},
	url = {https://doi.org/10.2527%2Fjas.2008-1759},
	year = 2010,
	month = {jan},
	publisher = {Oxford University Press ({OUP})},
	volume = {88},
	number = {1},
	pages = {16--22},
	author = {E. L. Sherman and J. D. Nkrumah and S. S. Moore},
	title = {Whole genome single nucleotide polymorphism associations with feed intake and feed efficiency in beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Snelling_2010,
	doi = {10.2527/jas.2009-2257},
	url = {https://doi.org/10.2527%2Fjas.2009-2257},
	year = 2010,
	month = {mar},
	publisher = {Oxford University Press ({OUP})},
	volume = {88},
	number = {3},
	pages = {837--848},
	author = {W. M. Snelling and M. F. Allan and J. W. Keele and L. A. Kuehn and T. McDaneld and T. P. L. Smith and T. S. Sonstegard and R. M. Thallman and G. L. Bennett},
	title = {Genome-wide association study of growth in crossbred beef cattle12},
	journal = {Journal of Animal Science}
}



@article{Olsen_2010,
	doi = {10.1111/j.1365-2052.2009.01998.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2009.01998.x},
	year = 2010,
	month = {may},
	publisher = {Wiley},
	volume = {41},
	number = {3},
	pages = {273--280},
	author = {H. G. Olsen and B. J. Hayes and M. P. Kent and T. Nome and M. Svendsen and S. Lien},
	title = {A genome wide association study for {QTL} affecting direct and maternal effects of stillbirth and dystocia in cattle},
	journal = {Animal Genetics}
}



@article{Pant_2010,
	doi = {10.1016/j.ygeno.2010.01.001},
	url = {https://doi.org/10.1016%2Fj.ygeno.2010.01.001},
	year = 2010,
	month = {mar},
	publisher = {Elsevier {BV}},
	volume = {95},
	number = {3},
	pages = {176--182},
	author = {Sameer D. Pant and Flavio S. Schenkel and Chris P. Verschoor and Qiumei You and David F. Kelton and Stephen S. Moore and Niel A. Karrow},
	title = {A principal component regression based genome wide analysis approach reveals the presence of a novel {QTL} on {BTA}7 for {MAP} resistance in holstein cattle},
	journal = {Genomics}
}



@article{Huang_2010,
	doi = {10.1111/j.1365-2052.2010.02046.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2010.02046.x},
	year = 2010,
	month = {nov},
	publisher = {Wiley},
	volume = {41},
	number = {6},
	pages = {570--578},
	author = {W. Huang and B. W. Kirkpatrick and G. J. M. Rosa and H. Khatib},
	title = {A genome-wide association study using selective {DNA} pooling identifies candidate markers for fertility in Holstein cattle},
	journal = {Animal Genetics}
}



@article{Pryce_2010,
	doi = {10.3168/jds.2009-2666},
	url = {https://doi.org/10.3168%2Fjds.2009-2666},
	year = 2010,
	month = {may},
	publisher = {American Dairy Science Association},
	volume = {93},
	number = {5},
	pages = {2202--2214},
	author = {J.E. Pryce and M. Haile-Mariam and K. Verbyla and P.J. Bowman and M.E. Goddard and B.J. Hayes},
	title = {Genetic markers for lactation persistency in primiparous Australian dairy cows},
	journal = {Journal of Dairy Science}
}



@article{Sahana_2010,
	doi = {10.1111/j.1365-2052.2010.02064.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2010.02064.x},
	year = 2010,
	month = {nov},
	publisher = {Wiley},
	volume = {41},
	number = {6},
	pages = {579--588},
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	title = {Identification of loci associated with tolerance to Johne's disease in Holstein cattle},
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	title = {Whole-genome association study for fatty acid composition of oleic acid in Japanese Black cattle},
	journal = {Animal Genetics}
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@article{Kirkpatrick_2011,
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	title = {Whole-Genome association analysis of susceptibility to paratuberculosis in Holstein cattle},
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	doi = {10.3168/jds.2009-2893},
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	year = 2010,
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	title = {A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes},
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@article{Garcia_2010,
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	year = 2010,
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	title = {Markers on Bovine Chromosome 20 Associated with Carcass Quality and Composition Traits and Incidence of Contracting Infectious Bovine Keratoconjunctivitis},
	journal = {Animal Biotechnology}
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	year = 2010,
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	title = {Single nucleotide polymorphisms at the imprinted bovine insulin-like growth factor 2 ({IGF}2) locus are associated with dairy performance in Irish Holstein-Friesian cattle},
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@article{Beecher_2010,
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	journal = {BMC Genetics}
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	year = 2011,
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	title = {Genome-Wide Association Study Identifies Two Major Loci Affecting Calving Ease and Growth-Related Traits in Cattle},
	journal = {Genetics}
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@article{Ruiz_Larra_aga_2010,
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	year = 2010,
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	title = {{SP}110 as a novel susceptibility gene for Mycobacterium avium subspecies paratuberculosis infection in cattle},
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@article{Wang_2011,
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	title = {Three novel single-nucleotide polymorphisms of {MBL}1 gene in Chinese native cattle and their associations with milk performance traits},
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}



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	doi = {10.1007/s11033-010-0524-1},
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	year = 2010,
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	doi = {10.1016/j.meatsci.2010.11.009},
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	year = 2011,
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	title = {Association analyses of single nucleotide polymorphisms in the {LEP} and {SCD}1 genes on the fatty acid profile of muscle fat in Simmental bulls},
	journal = {Meat Science}
}



@article{Aslan_2010,
	doi = {10.1186/1471-2156-11-111},
	url = {https://doi.org/10.1186%2F1471-2156-11-111},
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	title = {Regulatory polymorphisms in the bovine Ankyrin 1 gene promoter are associated with tenderness and intramuscular fat content},
	journal = {BMC Genetics}
}



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	doi = {10.3168/jds.2010-3381},
	url = {https://doi.org/10.3168%2Fjds.2010-3381},
	year = 2011,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {94},
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	author = {G. Sahana and B. Guldbrandtsen and M.S. Lund},
	title = {Genome-wide association study for calving traits in Danish and Swedish Holstein cattle},
	journal = {Journal of Dairy Science}
}



@article{Pimentel_2010,
	doi = {10.1111/j.1365-2052.2010.02148.x},
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	title = {Exploration of relationships between production and fertility traits in dairy cattle via association studies of {SNPs} within candidate genes derived by expression profiling},
	journal = {Animal Genetics}
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	year = 2011,
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	title = {Polymorphic Regions Affecting Human Height Also Control Stature in Cattle},
	journal = {Genetics}
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@article{Sikora_2011,
	doi = {10.1186/1471-2156-12-4},
	url = {https://doi.org/10.1186%2F1471-2156-12-4},
	year = 2011,
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	title = {{DNA} sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gs$\upalpha$)-encoding ({GNAS}) genomic imprinting domain are associated with performance traits},
	journal = {BMC Genetics}
}



@article{Bolormaa_2011,
	doi = {10.2527/jas.2010-3138},
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	year = 2011,
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	title = {A genome-wide association study of meat and carcass traits in Australian cattle1},
	journal = {Journal of Animal Science}
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	year = 2011,
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	title = {Whole-genome association study for milk protein composition in dairy cattle},
	journal = {Journal of Dairy Science}
}



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	journal = {Animal Genetics}
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	title = {Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows},
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	year = 2011,
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@article{Sodeland_2011,
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@article{Murdoch_2011,
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	year = 2011,
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@article{Rempel_2012,
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@article{Hawken_2012,
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	url = {https://doi.org/10.2527%2Fjas.2011-4410},
	year = 2012,
	month = {may},
	publisher = {Oxford University Press ({OUP})},
	volume = {90},
	number = {5},
	pages = {1398--1410},
	author = {R. J. Hawken and Y. D. Zhang and M. R. S. Fortes and E. Collis and W. C. Barris and N. J. Corbet and P. J. Williams and G. Fordyce and R. G. Holroyd and J. R. W. Walkley and W. Barendse and D. J. Johnston and K. C. Prayaga and B. Tier and A. Reverter and S. A. Lehnert},
	title = {Genome-wide association studies of female reproduction in tropically adapted beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Rincon_2011,
	doi = {10.1017/S002202991100080X},
	url = {https://doi.org/10.1017%2Fs002202991100080x},
	year = 2011,
	month = {nov},
	publisher = {Cambridge University Press ({CUP})},
	volume = {79},
	number = {1},
	pages = {66--75},
	author = {Gonzalo Rincon and Alma Islas-Trejo and Alejandro R Castillo and Dale E Bauman and Bruce J German and Juan F Medrano},
	title = {Polymorphisms in genes in the {SREBP}1 signalling pathway and {SCD} are associated with milk fatty acid composition in Holstein cattle},
	journal = {Journal of Dairy Research}
}



@article{Yang_2012,
	doi = {10.1016/j.vetimm.2011.11.010},
	url = {https://doi.org/10.1016%2Fj.vetimm.2011.11.010},
	year = 2012,
	month = {jan},
	publisher = {Elsevier {BV}},
	volume = {145},
	number = {1-2},
	pages = {223--232},
	author = {Yue Yang and Qiuling Li and Zhihua Ju and Jinming Huang and Lei Zhou and Rongling Li and Jianbin Li and Fangxiong Shi and Jifeng Zhong and Changfa Wang},
	title = {Three novel single-nucleotide polymorphisms of complement component 4 gene (C4A) in Chinese Holstein cattle and their associations with milk performance traits and {CH}50},
	journal = {Veterinary Immunology and Immunopathology}
}



@article{Lindholm_Perry_2011,
	doi = {10.1186/1471-2156-12-103},
	url = {https://doi.org/10.1186%2F1471-2156-12-103},
	year = 2011,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {12},
	number = {1},
	pages = {103},
	author = {Amanda K Lindholm-Perry and Andrea K Sexten and Larry A Kuehn and Timothy PL Smith and D Andy King and Steven D Shackelford and Tommy L Wheeler and Calvin L Ferrell and Thomas G Jenkins and Warren M Snelling and Harvey C Freetly},
	title = {Association, effects and validation of polymorphisms within the {NCAPG} - {LCORL} locus located on {BTA}6 with feed intake, gain, meat and carcass traits in beef cattle},
	journal = {BMC Genetics}
}



@article{Sun_2012,
	doi = {10.1139/g11-077},
	url = {https://doi.org/10.1139%2Fg11-077},
	year = 2012,
	month = {jan},
	publisher = {Canadian Science Publishing},
	volume = {55},
	number = {1},
	pages = {56--62},
	author = {Jiajie Sun and Chunlei Zhang and Xianyong Lan and Chuzhao Lei and Hong Chen},
	editor = {J. Bell},
	title = {Exploring polymorphisms and associations of the bovine {MOGAT}3 gene with growth traits},
	journal = {Genome}
}



@article{Huang_2012,
	doi = {10.3168/jds.2011-4757},
	url = {https://doi.org/10.3168%2Fjds.2011-4757},
	year = 2012,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {95},
	number = {1},
	pages = {440--449},
	author = {W. Huang and F. Pe{\~{n}}agaricano and K.R. Ahmad and J.A. Lucey and K.A. Weigel and H. Khatib},
	title = {Association between milk protein gene variants and protein composition traits in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Cecchinato_2012,
	doi = {10.3168/jds.2011-4581},
	url = {https://doi.org/10.3168%2Fjds.2011-4581},
	year = 2012,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {95},
	number = {1},
	pages = {450--454},
	author = {A. Cecchinato and C. Ribeca and A. Maurmayr and M. Penasa and M. De Marchi and N.P.P. Macciotta and M. Mele and P. Secchiari and G. Pagnacco and G. Bittante},
	title = {Short communication: Effects of $\upbeta$-lactoglobulin, stearoyl-coenzyme A desaturase 1, and sterol regulatory element binding protein gene allelic variants on milk production, composition, acidity, and coagulation properties of Brown Swiss cows},
	journal = {Journal of Dairy Science}
}



@article{Baeza_2011,
	doi = {10.4238/2011.december.19.3},
	url = {https://doi.org/10.4238%2F2011.december.19.3},
	year = 2011,
	publisher = {Genetics and Molecular Research},
	volume = {10},
	number = {4},
	pages = {3146--3156},
	author = {M.C. Baeza and P.M. Corva and L.A. Soria and G. Rinc{\'{o}}n and J.F. Medrano and E. Pavan and E.L. Villarreal and A. Schor and L. Melucci and C. Mezzadra and M.C. Miquel},
	title = {Genetic markers of body composition and carcass quality in grazing Brangus steers},
	journal = {Genet. Mol. Res.}
}



@article{Barendse_2011,
	doi = {10.1371/journal.pone.0029601},
	url = {https://doi.org/10.1371%2Fjournal.pone.0029601},
	year = 2011,
	month = {dec},
	publisher = {Public Library of Science ({PLoS})},
	volume = {6},
	number = {12},
	pages = {e29601},
	author = {William Barendse},
	editor = {Marlon R. Schneider},
	title = {Haplotype Analysis Improved Evidence for Candidate Genes for Intramuscular Fat Percentage from a Genome Wide Association Study of Cattle},
	journal = {PLoS ONE}
}



@article{Berkowicz_2011,
	doi = {10.1111/j.1365-2052.2011.02211.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02211.x},
	year = 2011,
	month = {may},
	publisher = {Wiley},
	volume = {43},
	number = {1},
	pages = {81--87},
	author = {E. W. Berkowicz and D. A. Magee and D. P. Berry and K. M. Sikora and D. J. Howard and M. P. Mullen and R. D. Evans and C. Spillane and D. E. MacHugh},
	title = {Single nucleotide polymorphisms in the imprinted bovine insulin-like growth factor 2 receptor gene ({IGF}2R) are associated with body size traits in Irish Holstein-Friesian cattle},
	journal = {Animal Genetics}
}



@article{Gill_2011,
	doi = {10.1111/j.1365-2052.2011.02216.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02216.x},
	year = 2011,
	month = {jun},
	publisher = {Wiley},
	volume = {43},
	number = {1},
	pages = {88--92},
	author = {J. L. Gill and S. C. Bishop and C. McCorquodale and J. L. Williams and P. Wiener},
	title = {Identification of polymorphisms in the malic enzyme 1, {NADP}($\mathplus$)-dependent, cytosolic and nuclear receptor subfamily 0, group B, member 2 genes and their associations with meat and carcass quality traits in commercial Angus cattle},
	journal = {Animal Genetics}
}



@article{Chamberlain_2012,
	doi = {10.3168/jds.2010-3786},
	url = {https://doi.org/10.3168%2Fjds.2010-3786},
	year = 2012,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {95},
	number = {2},
	pages = {864--875},
	author = {A.J. Chamberlain and B.J. Hayes and K. Savin and S. Bolormaa and H.C. McPartlan and P.J. Bowman and C. Van Der Jagt and S. MacEachern and M.E. Goddard},
	title = {Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Wijga_2012,
	doi = {10.3168/jds.2011-4717},
	url = {https://doi.org/10.3168%2Fjds.2011-4717},
	year = 2012,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {95},
	number = {2},
	pages = {899--908},
	author = {S. Wijga and J.W.M. Bastiaansen and E. Wall and E. Strandberg and Y. de Haas and L. Giblin and H. Bovenhuis},
	title = {Genomic associations with somatic cell score in first-lactation Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Mullen_2011,
	doi = {10.3389/fgene.2011.00003},
	url = {https://doi.org/10.3389%2Ffgene.2011.00003},
	year = 2011,
	publisher = {Frontiers Media {SA}},
	volume = {2},
	author = {Michael Paul Mullen and Donagh P. Berry and Dawn J. Howard and Michael G. Diskin and Ciaran O. Lynch and Linda Giblin and David A. Kenny and David A. Magee and Kieran G. Meade and Sinead M. Waters},
	title = {Single Nucleotide Polymorphisms in the Insulin-Like Growth Factor 1 ({IGF}-1) Gene are Associated with Performance in Holstein-Friesian Dairy Cattle},
	journal = {Front. Gene.}
}



@article{Zielke_2011,
	doi = {10.3389/fgene.2011.00016},
	url = {https://doi.org/10.3389%2Ffgene.2011.00016},
	year = 2011,
	publisher = {Frontiers Media {SA}},
	volume = {2},
	author = {Lea G. Zielke and Ralf H. Bortfeldt and Jens Tetens and Gudrun A. Brockmann},
	title = {{BDNF} Contributes to the Genetic Variance of Milk Fat Yield in German Holstein Cattle},
	journal = {Front. Gene.}
}



@article{Porto_Neto_2012,
	doi = {10.1007/s00251-012-0601-9},
	url = {https://doi.org/10.1007%2Fs00251-012-0601-9},
	year = 2012,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {64},
	number = {5},
	pages = {379--388},
	author = {Laercio R. Porto Neto and   and Nicholas N. Jonsson and Aaron Ingham and Rowan J. Bunch and Blair E. Harrison and William Barendse},
	title = {The {RIPK}2 gene: a positional candidate for tick burden supported by genetic associations in cattle and immunological response of knockout mouse},
	journal = {Immunogenetics}
}



@article{Finlay_2012,
	doi = {10.1371/journal.pone.0030545},
	url = {https://doi.org/10.1371%2Fjournal.pone.0030545},
	year = 2012,
	month = {feb},
	publisher = {Public Library of Science ({PLoS})},
	volume = {7},
	number = {2},
	pages = {e30545},
	author = {Emma K. Finlay and Donagh P. Berry and Brian Wickham and Eamonn P. Gormley and Daniel G. Bradley},
	editor = {Jean Louis Herrmann},
	title = {A Genome Wide Association Scan of Bovine Tuberculosis Susceptibility in Holstein-Friesian Dairy Cattle},
	journal = {PLoS ONE}
}



@article{Nalaila_2011,
	doi = {10.1111/j.1439-0388.2011.00954.x},
	url = {https://doi.org/10.1111%2Fj.1439-0388.2011.00954.x},
	year = 2011,
	month = {sep},
	publisher = {Wiley},
	volume = {129},
	number = {2},
	pages = {107--119},
	author = {S.M. Nalaila and P. Stothard and S.S. Moore and C. Li and Z. Wang},
	title = {Whole-genome {QTL} scan for ultrasound and carcass merit traits in beef cattle using Bayesian shrinkage method},
	journal = {Journal of Animal Breeding and Genetics}
}



@article{Duan_2011,
	doi = {10.1111/j.1365-2052.2011.02224.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02224.x},
	year = 2011,
	month = {jul},
	publisher = {Wiley},
	volume = {43},
	number = {2},
	pages = {115--122},
	author = {Q. Duan and R. G. Tait Jr and M. S. Mayes and D. J. Garrick and Q. Liu and A. L. Van Eenennaam and R. G. Mateescu and D. L. Van Overbeke and A. J. Garmyn and D. C. Beitz and J. M. Reecy},
	title = {Genetic polymorphisms in bovine transferrin receptor 2 ({TFR}2) and solute carrier family 40 (iron-regulated transporter), member 1 ({SLC}40A1) genes and their association with beef iron content},
	journal = {Animal Genetics}
}



@article{Meredith_2012,
	doi = {10.1186/1471-2156-13-21},
	url = {https://doi.org/10.1186%2F1471-2156-13-21},
	year = 2012,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {13},
	number = {1},
	pages = {21},
	author = {Brian K Meredith and Francis J Kearney and Emma K Finlay and Daniel G Bradley and Alan G Fahey and Donagh P Berry and David J Lynn},
	title = {Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland},
	journal = {BMC Genetics}
}



@article{Lindholm_Perry_2012,
	doi = {10.3389/fgene.2012.00039},
	url = {https://doi.org/10.3389%2Ffgene.2012.00039},
	year = 2012,
	publisher = {Frontiers Media {SA}},
	volume = {3},
	author = {Amanda K. Lindholm-Perry and Larry A. Kuehn and Lea A. Rempel and Timothy P. L. Smith and Robert A. Cushman and Tara G. McDaneld and Tommy L. Wheeler and Steven D. Shackelford and David A. King and Harvey C. Freetly},
	title = {Evaluation of Bovine chemerin ({RARRES}2) Gene Variation on Beef Cattle Production Traits1},
	journal = {Front. Gene.}
}



@article{Weikard_2011,
	doi = {10.1111/j.1365-2052.2011.02258.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02258.x},
	year = 2011,
	month = {sep},
	publisher = {Wiley},
	volume = {43},
	number = {3},
	pages = {318--323},
	author = {R. Weikard and P. Widmann and J. Buitkamp and R. Emmerling and C. Kuehn},
	title = {Revisiting the quantitative trait loci for milk production traits on {BTA}6},
	journal = {Animal Genetics}
}



@article{Guti_rrez_Gil_2012,
	doi = {10.1111/j.1365-2052.2012.02322.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02322.x},
	year = 2012,
	month = {feb},
	publisher = {Wiley},
	volume = {43},
	number = {6},
	pages = {654--661},
	author = {B. Guti{\'{e}}rrez-Gil and P. Wiener and J. L. Williams and C. S. Haley},
	title = {Investigation of the genetic architecture of a bone carcass weight {QTL} on {BTA}6},
	journal = {Anim Genet}
}



@article{McClure_2012,
	doi = {10.1111/j.1365-2052.2012.02323.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02323.x},
	year = 2012,
	month = {feb},
	publisher = {Wiley},
	volume = {43},
	number = {6},
	pages = {662--673},
	author = {M. C. McClure and H. R. Ramey and M. M. Rolf and S. D. McKay and J. E. Decker and R. H. Chapple and J. W. Kim and T. M. Taxis and R. L. Weaber and R. D. Schnabel and J. F. Taylor},
	title = {Genome-wide association analysis for quantitative trait loci influencing
		            W
		            arner{\textendash}
		            B
		            ratzler shear force in five taurine cattle breeds},
	journal = {Anim Genet}
}



@article{Rolf_2011,
	doi = {10.1111/j.1365-2052.2011.02273.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02273.x},
	year = 2011,
	month = {oct},
	publisher = {Wiley},
	volume = {43},
	number = {4},
	pages = {367--374},
	author = {M. M. Rolf and J. F. Taylor and R. D. Schnabel and S. D. McKay and M. C. McClure and S. L. Northcutt and M. S. Kerley and R. L. Weaber},
	title = {Genome-wide association analysis for feed efficiency in Angus cattle},
	journal = {Animal Genetics}
}



@article{Pausch_2012,
	doi = {10.1111/j.1365-2052.2012.02340.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02340.x},
	year = 2012,
	month = {mar},
	publisher = {Wiley},
	volume = {43},
	number = {6},
	pages = {689--695},
	author = {Hubert Pausch and Simone Jung and Christian Edel and Reiner Emmerling and Dieter Krogmeier and Kay-Uwe Götz and Ruedi Fries},
	title = {Genome-wide association study uncovers four {QTL} predisposing to supernumerary teats in cattle},
	journal = {Anim Genet}
}



@article{Lindholm_Perry_2012,
	doi = {10.1111/j.1365-2052.2011.02307.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02307.x},
	year = 2012,
	month = {feb},
	publisher = {Wiley},
	volume = {43},
	number = {5},
	pages = {599--603},
	author = {A. K. Lindholm-Perry and L. A. Kuehn and W. M. Snelling and T. P. L. Smith and C. L. Ferrell and T. G. Jenkins and D. Andy King and S. D. Shackelford and T. L. Wheeler and H. C. Freetly},
	title = {Genetic markers on {BTA}14 predictive for residual feed intake in beef steers and their effects on carcass and meat quality traits},
	journal = {Anim Genet}
}



@article{Strucken_2011,
	doi = {10.1111/j.1365-2052.2011.02278.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02278.x},
	year = 2011,
	month = {oct},
	publisher = {Wiley},
	volume = {43},
	number = {4},
	pages = {375--382},
	author = {E. M. Strucken and R. H. Bortfeldt and D. J. de Koning and G. A. Brockmann},
	title = {Genome-wide associations for investigating time-dependent genetic effects for milk production traits in dairy cattle},
	journal = {Animal Genetics}
}



@article{Littlejohn_2011,
	doi = {10.1111/j.1365-2052.2011.02293.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2011.02293.x},
	year = 2011,
	month = {dec},
	publisher = {Wiley},
	volume = {43},
	number = {5},
	pages = {591--594},
	author = {M. Littlejohn and T. Grala and K. Sanders and C. Walker and G. Waghorn and K. Macdonald and W. Coppieters and M. Georges and R. Spelman and E. Hillerton and S. Davis and R. Snell},
	title = {Genetic variation in {PLAG}1 associates with early life body weight and peripubertal weight and growth in Bos taurus},
	journal = {Anim Genet}
}



@article{Porto_Neto_2012,
	doi = {10.1111/j.1365-2052.2012.02330.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02330.x},
	year = 2012,
	month = {feb},
	publisher = {Wiley},
	volume = {43},
	number = {6},
	pages = {785--789},
	author = {L. R. Porto Neto and R. J. Bunch and B. E. Harrison and W. Barendse},
	title = {Variation in {theXKR}4gene was significantly associated with subcutaneous rump fat thickness in indicine and composite cattle},
	journal = {Anim Genet}
}



@article{Tetens_2012,
	doi = {10.1111/j.1365-2052.2012.02357.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02357.x},
	year = 2012,
	month = {apr},
	publisher = {Wiley},
	volume = {44},
	number = {1},
	pages = {1--8},
	author = {J. Tetens and T. Seidenspinner and N. Buttchereit and G. Thaller},
	title = {Whole-genome association study for energy balance and fat/protein ratio in German Holstein bull dams},
	journal = {Anim Genet}
}



@article{van_Hulzen_2012,
	doi = {10.3168/jds.2011-5005},
	url = {https://doi.org/10.3168%2Fjds.2011-5005},
	year = 2012,
	month = {may},
	publisher = {American Dairy Science Association},
	volume = {95},
	number = {5},
	pages = {2740--2748},
	author = {K.J.E. van Hulzen and G.C.B. Schopen and J.A.M. van Arendonk and M. Nielen and A.P. Koets and C. Schrooten and H.C.M. Heuven},
	title = {Genome-wide association study to identify chromosomal regions associated with antibody response to Mycobacterium avium subspecies paratuberculosis in milk of Dutch Holstein-Friesians},
	journal = {Journal of Dairy Science}
}



@article{Fortes_2012,
	doi = {10.1111/j.1365-2052.2012.02367.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02367.x},
	year = 2012,
	month = {may},
	publisher = {Wiley},
	volume = {44},
	number = {1},
	pages = {91--95},
	author = {Marina R. S. Fortes and Yutao Li and Eliza Collis and Yuandan Zhang and Rachel J. Hawken},
	title = {The {IGF}1 pathway genes and their association with age of puberty in cattle},
	journal = {Anim Genet}
}



@article{Pausch_2012,
	doi = {10.1371/journal.pone.0036346},
	url = {https://doi.org/10.1371%2Fjournal.pone.0036346},
	year = 2012,
	month = {may},
	publisher = {Public Library of Science ({PLoS})},
	volume = {7},
	number = {5},
	pages = {e36346},
	author = {Hubert Pausch and Xiaolong Wang and Simone Jung and Dieter Krogmeier and Christian Edel and Reiner Emmerling and Kay-Uwe Götz and Ruedi Fries},
	editor = {Stephen Moore},
	title = {Identification of {QTL} for {UV}-Protective Eye Area Pigmentation in Cattle by Progeny Phenotyping and Genome-Wide Association Analysis},
	journal = {PLoS ONE}
}



@article{Nishimura_2012,
	doi = {10.1186/1471-2156-13-40},
	url = {https://doi.org/10.1186%2F1471-2156-13-40},
	year = 2012,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {13},
	number = {1},
	pages = {40},
	author = {Shota Nishimura and Toshio Watanabe and Kazunori Mizoshita and Ken Tatsuda and Tatsuo Fujita and Naoto Watanabe and Yoshikazu Sugimoto and Akiko Takasuga},
	title = {Genome-wide association study identified three major {QTL} for carcass weight including the {PLAG}1-{CHCHD}7 {QTN} for stature in Japanese Black cattle},
	journal = {BMC Genetics}
}



@article{Li_2012,
	doi = {10.1017/s0022029912000210},
	url = {https://doi.org/10.1017%2Fs0022029912000210},
	year = 2012,
	month = {jun},
	publisher = {Cambridge University Press ({CUP})},
	volume = {79},
	number = {3},
	pages = {310--317},
	author = {Geng Li and Karam Khateeb and Erin Schaeffer and Bao Zhang and Hasan Khatib},
	title = {Genes of the transforming growth factor-beta signalling pathway are associated with pre-implantation embryonic development in cattle},
	journal = {Journal of Dairy Research}
}



@article{Pe_agaricano_2012,
	doi = {10.1111/j.1365-2052.2012.02350.x},
	url = {https://doi.org/10.1111%2Fj.1365-2052.2012.02350.x},
	year = 2012,
	month = {jun},
	publisher = {Wiley},
	volume = {43},
	pages = {65--71},
	author = {F. Pe{\~{n}}agaricano and K. A. Weigel and H. Khatib},
	title = {Genome-wide association study identifies candidate markers for bull fertility in Holstein dairy cattle},
	journal = {Animal Genetics}
}



@article{Wang_2012,
	doi = {10.1371/journal.pone.0040711},
	url = {https://doi.org/10.1371%2Fjournal.pone.0040711},
	year = 2012,
	month = {jul},
	publisher = {Public Library of Science ({PLoS})},
	volume = {7},
	number = {7},
	pages = {e40711},
	author = {Xiaolong Wang and Christine Wurmser and Hubert Pausch and Simone Jung and Friedrich Reinhardt and Jens Tetens and Georg Thaller and Ruedi Fries},
	editor = {Vladimir N. Uversky},
	title = {Identification and Dissection of Four Major {QTL} Affecting Milk Fat Content in the German Holstein-Friesian Population},
	journal = {PLoS ONE}
}



@article{Fortes_2012,
	doi = {10.1095/biolreprod.112.101089},
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@article{Casas_2013,
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	title = {Bovine {CLEC}7A genetic variants and their association with seropositivity in Johne{\textquotesingle}s disease {ELISA}},
	journal = {Gene}
}



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	url = {https://doi.org/10.1186%2F1471-2156-15-8},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
	pages = {8},
	author = {Johanna K Höglund and Goutam Sahana and Bernt Guldbrandtsen and Mogens S Lund},
	title = {Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle},
	journal = {BMC Genetics}
}



@article{Raven_2014,
	doi = {10.1186/1471-2164-15-62},
	url = {https://doi.org/10.1186%2F1471-2164-15-62},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
	pages = {62},
	author = {Lesley-Ann Raven and Benjamin G Cocks and Ben J Hayes},
	title = {Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle},
	journal = {BMC Genomics}
}



@article{Lee_2014,
	doi = {10.1016/j.meatsci.2013.11.026},
	url = {https://doi.org/10.1016%2Fj.meatsci.2013.11.026},
	year = 2014,
	month = {apr},
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	volume = {96},
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	author = {Seung-Hwan Lee and Seung-Chang Kim and Han-Ha Chai and Soo-Hyun Cho and Hyeong-Cheol Kim and Dajeong Lim and Bong-Hwan Choi and Chang-Gwan Dang and Aditi Sharma and Cedric Gondro and Boh-Suk Yang and Seong-Koo Hong},
	title = {Mutations in calpastatin and $\upmu$-calpain are associated with meat tenderness, flavor and juiciness in Hanwoo (Korean cattle): Molecular modeling of the effects of substitutions in the calpastatin/$\upmu$-calpain complex},
	journal = {Meat Science}
}



@article{Abo_Ismail_2014,
	doi = {10.1186/1471-2156-15-14},
	url = {https://doi.org/10.1186%2F1471-2156-15-14},
	year = 2014,
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	author = {Mohammed K Abo-Ismail and Gordon Vander Voort and James J Squires and Kendall C Swanson and Ira B Mandell and Xiaoping Liao and Paul Stothard and Stephen Moore and Graham Plastow and Stephen P Miller},
	title = {Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle},
	journal = {BMC Genetics}
}



@article{Abdel_Shafy_2014,
	doi = {10.3168/jds.2013-7149},
	url = {https://doi.org/10.3168%2Fjds.2013-7149},
	year = 2014,
	month = {apr},
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	number = {4},
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	author = {Hamdy Abdel-Shafy and Ralf H. Bortfeldt and Monika Reissmann and Gudrun A. Brockmann},
	title = {Short communication: Validation of somatic cell score{\textendash}associated loci identified in a genome-wide association study in German Holstein cattle},
	journal = {Journal of Dairy Science}
}



@article{Bermingham_2014,
	doi = {10.1038/hdy.2013.137},
	url = {https://doi.org/10.1038%2Fhdy.2013.137},
	year = 2014,
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	title = {Genome-wide association study identifies novel loci associated with resistance to bovine tuberculosis},
	journal = {Heredity}
}



@article{Santana_2014,
	doi = {10.1186/1471-2156-15-21},
	url = {https://doi.org/10.1186%2F1471-2156-15-21},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
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	author = {Miguel HA Santana and Yuri T Utsunomiya and Haroldo HR Neves and Rodrigo C Gomes and Jos{\'{e}} F Garcia and Heidge Fukumasu and Saulo L Silva and Gerson A Oliveira Junior and P{\^{a}}mela A Alexandre and Paulo R Leme and Ricardo A Brassaloti and Luiz L Coutinho and Thiago G Lopes and Fl{\'{a}}vio V Meirelles and Joanir P Eler and Jos{\'{e}} BS Ferraz},
	title = {Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle},
	journal = {BMC Genetics}
}



@article{Ibeagha_Awemu_2014,
	doi = {10.1186/1471-2156-15-25},
	url = {https://doi.org/10.1186%2F1471-2156-15-25},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
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	author = {Eveline M Ibeagha-Awemu and Kingsley A Akwanji and Fr{\'{e}}d{\'{e}}ric Beaudoin and Xin Zhao},
	title = {Associations between variants of {FADS} genes and omega-3 and omega-6 milk fatty acids of Canadian Holstein cows},
	journal = {BMC Genetics}
}



@article{Cole_2014,
	doi = {10.3168/jds.2013-7409},
	url = {https://doi.org/10.3168%2Fjds.2013-7409},
	year = 2014,
	month = {may},
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	volume = {97},
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	author = {J.B. Cole and B. Waurich and M. Wensch-Dorendorf and D.M. Bickhart and H.H. Swalve},
	title = {A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits},
	journal = {Journal of Dairy Science}
}



@article{Hering_2014,
	doi = {10.1016/j.anireprosci.2014.01.012},
	url = {https://doi.org/10.1016%2Fj.anireprosci.2014.01.012},
	year = 2014,
	month = {may},
	publisher = {Elsevier {BV}},
	volume = {146},
	number = {3-4},
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	author = {D.M. Hering and K. Olenski and S. Kaminski},
	title = {Genome-wide association study for poor sperm motility in Holstein-Friesian bulls},
	journal = {Animal Reproduction Science}
}



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	url = {https://doi.org/10.1111%2Fage.12134},
	year = 2014,
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	title = {A polymorphism {inXKR}4is significantly associated with serum prolactin concentrations in beef cows grazing tall fescue},
	journal = {Anim Genet}
}



@article{McDaneld_2014,
	doi = {10.2527/jas.2012-6807},
	url = {https://doi.org/10.2527%2Fjas.2012-6807},
	year = 2014,
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	title = {Genomewide association study of reproductive efficiency in female cattle1,2,3,4},
	journal = {Journal of Animal Science}
}



@article{Lindholm_Perry_2014,
	doi = {10.1111/age.12151},
	url = {https://doi.org/10.1111%2Fage.12151},
	year = 2014,
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	title = {{DNA} polymorphisms and transcript abundance {ofPRKAG}2and phosphorylated {AMP}-activated protein kinase in the rumen are associated with gain and feed intake in beef steers},
	journal = {Anim Genet}
}



@article{Buzanskas_2014,
	doi = {10.1371/journal.pone.0094802},
	url = {https://doi.org/10.1371%2Fjournal.pone.0094802},
	year = 2014,
	month = {apr},
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	author = {Marcos E. Buzanskas and Daniela A. Grossi and Ricardo V. Ventura and Fl{\'{a}}vio S. Schenkel and Mehdi Sargolzaei and Sarah L. C. Meirelles and Fabiana B. Mokry and Roberto H. Higa and Maur{\'{\i}}cio A. Mudadu and Marcos V. G. Barbosa. da Silva and Simone C. M. Niciura and Roberto A. A. Torres. J{\'{u}}nior and Maur{\'{\i}}cio M. Alencar and Luciana C. A. Regitano and Dan{\'{\i}}sio P. Munari},
	editor = {Shuhong Zhao},
	title = {Genome-Wide Association for Growth Traits in Canchim Beef Cattle},
	journal = {PLoS ONE}
}



@article{Fontanesi_2014,
	doi = {10.1111/age.12164},
	url = {https://doi.org/10.1111%2Fage.12164},
	year = 2014,
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	author = {L. Fontanesi and D. G. Cal{\`{o}} and G. Galimberti and R. Negrini and R. Marino and A. Nardone and P. Ajmone-Marsan and V. Russo},
	title = {A candidate gene association study for nine economically important traits in Italian Holstein cattle},
	journal = {Anim Genet}
}



@article{Cecchinato_2014,
	doi = {10.1017/s1751731114001098},
	url = {https://doi.org/10.1017%2Fs1751731114001098},
	year = 2014,
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	title = {Candidate gene association analysis for milk yield, composition, urea nitrogen and somatic cell scores in Brown Swiss cows},
	journal = {Animal}
}



@article{Huson_2014,
	doi = {10.3389/fgene.2014.00101},
	url = {https://doi.org/10.3389%2Ffgene.2014.00101},
	year = 2014,
	month = {apr},
	publisher = {Frontiers Media {SA}},
	volume = {5},
	author = {Heather J. Huson and Eui-Soo Kim and Robert W. Godfrey and Timothy A. Olson and Matthew C. McClure and Chad C. Chase and Rita Rizzi and Ana M. P. O{\textquotesingle}Brien and Curt P. Van Tassell and Jos{\~{A}}{\textcopyright} F. Garcia and Tad S. Sonstegard},
	title = {Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle},
	journal = {Front. Genet.}
}



@article{Cardoso_2014,
	doi = {10.1016/j.gene.2014.05.033},
	url = {https://doi.org/10.1016%2Fj.gene.2014.05.033},
	year = 2014,
	month = {jul},
	publisher = {Elsevier {BV}},
	volume = {545},
	number = {2},
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	author = {Diercles Francisco Cardoso and F{\'{a}}bio Ricardo Pablos de Souza and Greg{\'{o}}rio Miguel Ferreira de Camargo and Patr{\'{\i}}cia Dias da Silva Fonseca and Larissa Fernanda Simielli Fonseca and Camila Urbano Braz and Arione Augusti Boligon and Maria Eug{\^{e}}nia Zerlotti Mercadante and Lucia Galv{\~{a}}o de Albuquerque and Humberto Tonhati},
	title = {Polymorphism analysis in genes of the somatotropic axis in Nellore cattle selected for growth},
	journal = {Gene}
}



@article{Li_2014,
	doi = {10.1371/journal.pone.0096186},
	url = {https://doi.org/10.1371%2Fjournal.pone.0096186},
	year = 2014,
	month = {may},
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	number = {5},
	pages = {e96186},
	author = {Cong Li and Dongxiao Sun and Shengli Zhang and Sheng Wang and Xiaoping Wu and Qin Zhang and Lin Liu and Yanhua Li and Lv Qiao},
	editor = {Lin Chen},
	title = {Genome Wide Association Study Identifies 20 Novel Promising Genes Associated with Milk Fatty Acid Traits in Chinese Holstein},
	journal = {PLoS ONE}
}



@article{Abdel_Shafy_2014,
	doi = {10.1186/1297-9686-46-35},
	url = {https://doi.org/10.1186%2F1297-9686-46-35},
	year = 2014,
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	title = {Single nucleotide polymorphism and haplotype effects associated with somatic cell score in German Holstein cattle},
	journal = {Genetics Selection Evolution}
}



@article{Santana_2014,
	doi = {10.1111/jbg.12084},
	url = {https://doi.org/10.1111%2Fjbg.12084},
	year = 2014,
	month = {feb},
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	title = {Genome-wide association study for feedlot average daily gain in Nellore cattle (Bos indicus
		)},
	journal = {J. Anim. Breed. Genet.}
}



@article{Saatchi_2014,
	doi = {10.1186/1471-2164-15-442},
	url = {https://doi.org/10.1186%2F1471-2164-15-442},
	year = 2014,
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	journal = {BMC Genomics}
}



@article{Strillacci_2014,
	doi = {10.1111/age.12174},
	url = {https://doi.org/10.1111%2Fage.12174},
	year = 2014,
	month = {jun},
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	title = {Quantitative trait loci mapping for conjugated linoleic acid, vaccenic acid and ∆9-desaturase in Italian Brown Swiss dairy cattle using selective {DNA} pooling},
	journal = {Anim Genet}
}



@article{Thompson_Crispi_2014,
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	url = {https://doi.org/10.1186%2F1471-2164-15-559},
	year = 2014,
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	title = {A genome-wide association study of immune response traits in Canadian Holstein cattle},
	journal = {BMC Genomics}
}



@article{Wang_2014,
	doi = {10.1186/1471-2164-15-630},
	url = {https://doi.org/10.1186%2F1471-2164-15-630},
	year = 2014,
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	author = {Xiuge Wang and Jifeng Zhong and Yundong Gao and Zhihua Ju and Jinming Huang},
	title = {A {SNP} in intron 8 of {CD}46 causes a novel transcript associated with mastitis in Holsteins},
	journal = {BMC Genomics}
}



@article{Sun_2014,
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	year = 2014,
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	editor = {William Barendse},
	title = {Improvement of Prediction Ability for Genomic Selection of Dairy Cattle by Including Dominance Effects},
	journal = {PLoS ONE}
}



@article{Fang_2014,
	doi = {10.1371/journal.pone.0099544},
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	year = 2014,
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	author = {Ming Fang and Weixuan Fu and Dan Jiang and Qin Zhang and Dongxiao Sun and Xiangdong Ding and Jianfeng Liu},
	editor = {Stephen Moore},
	title = {A Multiple-{SNP} Approach for Genome-Wide Association Study of Milk Production Traits in Chinese Holstein Cattle},
	journal = {PLoS ONE }
}



@article{Allais_2014,
	doi = {10.2527/jas.2014-7868},
	url = {https://doi.org/10.2527%2Fjas.2014-7868},
	year = 2014,
	month = {oct},
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	title = {Fine mapping of quantitative trait loci underlying sensory meat quality traits in three French beef cattle breeds1},
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}



@article{Sahana_2014,
	doi = {10.3168/jds.2014-8141},
	url = {https://doi.org/10.3168%2Fjds.2014-8141},
	year = 2014,
	month = {nov},
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	volume = {97},
	number = {11},
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	author = {G. Sahana and B. Guldbrandtsen and B. Thomsen and L-E. Holm and F. Panitz and R.F. Br{\o}ndum and C. Bendixen and M.S. Lund},
	title = {Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Mart_nez_2014,
	doi = {10.4238/2014.August.25.5},
	url = {https://doi.org/10.4238%2F2014.august.25.5},
	year = 2014,
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	author = {R. Mart{\'{\i}}nez and Y. G{\'{o}}mez and J.F.M. Rocha},
	title = {Genome-wide association study on growth traits in Colombian creole breeds and crossbreeds with Zebu cattle},
	journal = {Genet. Mol. Res.}
}



@article{Sharma_2014,
	doi = {10.1111/age.12204},
	url = {https://doi.org/10.1111%2Fage.12204},
	year = 2014,
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	title = {Validation of genetic polymorphisms on {BTA}14 associated with carcass trait in a commercial Hanwoo population},
	journal = {Anim Genet}
}



@article{Hyeong_2014,
	doi = {10.5713/ajas.2014.14273},
	url = {https://doi.org/10.5713%2Fajas.2014.14273},
	year = 2014,
	month = {aug},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {27},
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	author = {K.-E. Hyeong and A. Iqbal and J.-J. Kim},
	title = {A Genome Wide Association Study on Age at First Calving Using High Density Single Nucleotide Polymorphism Chips in Hanwoo (Bos taurus coreanae)},
	journal = {Asian Australas. J. Anim. Sci}
}



@article{Dang_2014,
	doi = {10.5713/ajas.2013.13690},
	url = {https://doi.org/10.5713%2Fajas.2013.13690},
	year = 2014,
	month = {aug},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {27},
	number = {9},
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	author = {C. G. Dang and S. H. Cho and A. Sharma and H. C. Kim and G. J. Jeon and S. H. Yeon and S. K. Hong and B. Y. Park and H. S. Kang and S. H. Lee},
	title = {Genome-wide Association Study for Warner-Bratzler Shear Force and Sensory Traits in Hanwoo (Korean Cattle)},
	journal = {Asian Australas. J. Anim. Sci}
}



@article{Joerg_2014,
	doi = {10.1111/age.12215},
	url = {https://doi.org/10.1111%2Fage.12215},
	year = 2014,
	month = {sep},
	publisher = {Wiley},
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	number = {6},
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	author = {H. Joerg and C. Meili and O. Ruprecht and E. Bangerter and A. Burren and A. Bigler},
	title = {A genome-wide association study reveals a {QTL} influencing caudal supernumerary teats in Holstein cattle},
	journal = {Anim Genet}
}



@article{K_pper_2014,
	doi = {10.1017/S1751731114001232},
	url = {https://doi.org/10.1017%2Fs1751731114001232},
	year = 2014,
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	title = {Phenotype definition is a main point in genome-wide association studies for bovine Mycobacterium avium ssp. paratuberculosis infection status},
	journal = {Animal}
}



@article{Doran_2014,
	doi = {10.1186/1471-2164-15-837},
	url = {https://doi.org/10.1186%2F1471-2164-15-837},
	year = 2014,
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	volume = {15},
	number = {1},
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	author = {Anthony G Doran and Donagh P Berry and Christopher J Creevey},
	title = {Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle},
	journal = {BMC Genomics}
}



@article{Strillacci_2014,
	doi = {10.1186/s12863-014-0106-7},
	url = {https://doi.org/10.1186%2Fs12863-014-0106-7},
	year = 2014,
	month = {oct},
	publisher = {Springer Science and Business Media {LLC}},
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	title = {Genome-wide association study for somatic cell score in Valdostana Red Pied cattle breed using pooled {DNA}},
	journal = {BMC Genetics}
}



@article{Venhoranta_2014,
	doi = {10.1186/1471-2164-15-890},
	url = {https://doi.org/10.1186%2F1471-2164-15-890},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
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	author = {Heli Venhoranta and Hubert Pausch and Krzysztof Flisikowski and Christine Wurmser and Juhani Taponen and Helena Rautala and Alexander Kind and Angelika Schnieke and Ruedi Fries and Hannes Lohi and Magnus Andersson},
	title = {In frame exon skipping in {UBE}3B is associated with developmental disorders and increased mortality in cattle},
	journal = {BMC Genomics}
}



@article{Wu_2014,
	doi = {10.1371/journal.pone.0109330},
	url = {https://doi.org/10.1371%2Fjournal.pone.0109330},
	year = 2014,
	month = {oct},
	publisher = {Public Library of Science ({PLoS})},
	volume = {9},
	number = {10},
	pages = {e109330},
	author = {Yang Wu and Huizhong Fan and Yanhui Wang and Lupei Zhang and Xue Gao and Yan Chen and Junya Li and HongYan Ren and Huijiang Gao},
	editor = {Zhongxue Chen},
	title = {Genome-Wide Association Studies Using Haplotypes and Individual {SNPs} in Simmental Cattle},
	journal = {PLoS ONE}
}



@article{Casas_2014,
	doi = {10.1111/age.12239},
	url = {https://doi.org/10.1111%2Fage.12239},
	year = 2014,
	month = {nov},
	publisher = {Wiley},
	volume = {46},
	number = {1},
	pages = {8--15},
	author = {E. Casas and B. E. Hessman and J. W. Keele and J. F. Ridpath},
	title = {A genome-wide association study for the incidence of persistent bovine viral diarrhea virus infection in cattle},
	journal = {Anim Genet}
}



@article{Saatchi_2014,
	doi = {10.1186/1471-2164-15-1004},
	url = {https://doi.org/10.1186%2F1471-2164-15-1004},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
	pages = {1004},
	author = {Mahdi Saatchi and Jonathan E Beever and Jared E Decker and Dan B Faulkner and Harvey C Freetly and Stephanie L Hansen and Helen Yampara-Iquise and Kristen A Johnson and Stephen D Kachman and Monty S Kerley and JaeWoo Kim and Daniel D Loy and Elisa Marques and Holly L Neibergs and E Pollak and Robert D Schnabel and Christopher M Seabury and Daniel W Shike and Warren M Snelling and Matthew L Spangler and Robert L Weaber and Dorian J Garrick and Jeremy F Taylor},
	title = {{QTLs} associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies},
	journal = {BMC Genomics}
}



@article{Verbeke_2014,
	doi = {10.3168/jds.2014-8216},
	url = {https://doi.org/10.3168%2Fjds.2014-8216},
	year = 2014,
	month = {dec},
	publisher = {American Dairy Science Association},
	volume = {97},
	number = {12},
	pages = {7927--7939},
	author = {Joren Verbeke and Mario Van Poucke and Luc Peelman and Sofie Piepers and Sarne De Vliegher},
	title = {Associations between {CXCR}1 polymorphisms and pathogen-specific incidence rate of clinical mastitis, test-day somatic cell count, and test-day milk yield},
	journal = {Journal of Dairy Science}
}



@article{Hering_2014,
	doi = {10.1016/j.anireprosci.2014.10.022},
	url = {https://doi.org/10.1016%2Fj.anireprosci.2014.10.022},
	year = 2014,
	month = {dec},
	publisher = {Elsevier {BV}},
	volume = {151},
	number = {3-4},
	pages = {126--130},
	author = {D.M. Hering and K. Ole{\'{n}}ski and A. Ru{\'{s}}{\'{c}} and S. Kaminski},
	title = {Genome-wide association study for semen volume and total number of sperm in Holstein-Friesian bulls},
	journal = {Animal Reproduction Science}
}



@article{van_der_Spek_2015,
	doi = {10.3168/jds.2014-8302},
	url = {https://doi.org/10.3168%2Fjds.2014-8302},
	year = 2015,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {2},
	pages = {1286--1295},
	author = {D. van der Spek and J.A.M. van Arendonk and H. Bovenhuis},
	title = {Genome-wide association study for claw disorders and trimming status in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Jiang_2014,
	doi = {10.1186/1471-2164-15-1105},
	url = {https://doi.org/10.1186%2F1471-2164-15-1105},
	year = 2014,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
	author = {Li Jiang and Xuan Liu and Jie Yang and Haifei Wang and Jicai Jiang and Lili Liu and Sang He and Xiangdong Ding and Jianfeng Liu and Qin Zhang},
	title = {Targeted resequencing of {GWAS} loci reveals novel genetic variants for milk production traits},
	journal = {BMC Genomics}
}



@article{Buitenhuis_2014,
	doi = {10.1186/1471-2164-15-1112},
	url = {https://doi.org/10.1186%2F1471-2164-15-1112},
	year = 2014,
	publisher = {Springer Science and Business Media {LLC}},
	volume = {15},
	number = {1},
	pages = {1112},
	author = {Bart Buitenhuis and Luc LG Janss and Nina A Poulsen and Lotte B Larsen and Mette K Larsen and Peter S{\o}rensen},
	title = {Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle},
	journal = {BMC Genomics}
}



@article{M_sz_ros_2014,
	doi = {10.1111/age.12249},
	url = {https://doi.org/10.1111%2Fage.12249},
	year = 2014,
	month = {dec},
	publisher = {Wiley},
	volume = {46},
	number = {1},
	pages = {65--68},
	author = {G{\'{a}}bor M{\'{e}}sz{\'{a}}ros and Elisabeth Petautschnig and Hermann Schwarzenbacher and Johann Sölkner},
	title = {Genomic regions influencing coat color saturation and facial markings in Fleckvieh cattle},
	journal = {Anim Genet}
}



@article{Lee_2014,
	doi = {10.5713/ajas.14.0383},
	url = {https://doi.org/10.5713%2Fajas.14.0383},
	year = 2014,
	month = {dec},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {28},
	number = {2},
	pages = {166--170},
	author = {Bo-Young Lee and Kwang-Nyeong Lee and Taeheon Lee and Jong-Hyeon Park and Su-Mi Kim and Hyang-Sim Lee and Dong-Su Chung and Hang-Sub Shim and Hak-Kyo Lee and Heebal Kim},
	title = {Bovine Genome-wide Association Study for Genetic Elements to Resist the Infection of Foot-and-mouth Disease in the Field},
	journal = {Asian Australas. J. Anim. Sci}
}



@article{Hayakawa_2015,
	doi = {10.1111/asj.12357},
	url = {https://doi.org/10.1111%2Fasj.12357},
	year = 2015,
	month = {jan},
	publisher = {Wiley},
	volume = {86},
	number = {8},
	pages = {737--746},
	author = {Kiri Hayakawa and Takayuki Sakamoto and Atsushi Ishii and Keita Yamaji and Yoshinobu Uemoto and Nanae Sasago and Eiji Kobayashi and Naohiko Kobayashi and Tamako Matsuhashi and Shin Maruyama and Hirokazu Matsumoto and Kenji Oyama and Hideyuki Mannen and Shinji Sasazaki},
	title = {The g.841G$\greater$C {SNP} {ofFASNgene} is associated with fatty acid composition in beef cattle},
	journal = {Animal Science Journal}
}



@article{Alexandre_2014,
	doi = {10.1016/j.mgene.2014.01.003},
	url = {https://doi.org/10.1016%2Fj.mgene.2014.01.003},
	year = 2014,
	month = {dec},
	publisher = {Elsevier {BV}},
	volume = {2},
	pages = {206--217},
	author = {P{\^{a}}mela A. Alexandre and Rodrigo C. Gomes and Miguel H.A. Santana and Saulo L. Silva and Paulo R. Leme and Maur{\'{\i}}cio A. Mudadu and Luciana C.A. Regitano and Fl{\'{a}}vio V. Meirelles and Jos{\'{e}} B.S. Ferraz and Heidge Fukumasu},
	title = {Bovine {NR}1I3 gene polymorphisms and its association with feed efficiency traits in Nellore cattle},
	journal = {Meta Gene}
}



@article{Goszczynski_2014,
	doi = {10.1016/j.mgene.2014.09.001},
	url = {https://doi.org/10.1016%2Fj.mgene.2014.09.001},
	year = 2014,
	month = {dec},
	publisher = {Elsevier {BV}},
	volume = {2},
	pages = {746--760},
	author = {Daniel Estanislao Goszczynski and Juliana Papaleo Mazzucco and Mar{\'{\i}}a Ver{\'{o}}nica Ripoli and Edgardo Leopoldo Villarreal and Andr{\'{e}}s Rogberg-Mu{\~{n}}oz and Carlos Alberto Mezzadra and Lilia Magdalena Melucci and Guillermo Giovambattista},
	title = {Characterization of the bovine gene {LIPE} and possible influence on fatty acid composition of meat},
	journal = {Meta Gene}
}



@article{Pauciullo_2015,
	doi = {10.1111/age.12261},
	url = {https://doi.org/10.1111%2Fage.12261},
	year = 2015,
	month = {jan},
	publisher = {Wiley},
	volume = {46},
	number = {2},
	pages = {122--132},
	author = {A. Pauciullo and J. Küpper and H. Brandt and K. Donat and L. Iannuzzi and G. Erhardt},
	title = {Wingless-type {MMTV} integration site family member 2({WNT}2) gene is associated with resistance to {MAP} in faecal culture and antibody response in Holstein cattle},
	journal = {Anim Genet}
}



@article{Liu_2015,
	doi = {10.5713/ajas.13.0837},
	url = {https://doi.org/10.5713%2Fajas.13.0837},
	year = 2015,
	month = {feb},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {28},
	number = {4},
	pages = {467--475},
	author = {Xuan Liu and Tahir Usman and Yachun Wang and Zezhao Wang and Xianzhou Xu and Meng Wu and Yi Zhang and Xu Zhang and Qiang Li and Lin Liu and Wanhai Shi and Chunhua Qin and Fanjun Geng and Congyong Wang and Rui Tan and Xixia Huang and Airong Liu and Hongjun Wu and Shixin Tan and Ying Yu},
	title = {Polymorphisms in Epigenetic and Meat Quality Related Genes in Fourteen Cattle Breeds and Association with Beef Quality and Carcass Traits},
	journal = {Asian Australas. J. Anim. Sci}
}



@article{Tetens_2015,
	doi = {10.1152/physiolgenomics.00126.2014},
	url = {https://doi.org/10.1152%2Fphysiolgenomics.00126.2014},
	year = 2015,
	month = {apr},
	publisher = {American Physiological Society},
	volume = {47},
	number = {4},
	pages = {129--137},
	author = {Jens Tetens and Claas Heuer and Iris Heyer and Matthias S. Klein and Wolfram Gronwald and Wolfgang Junge and Peter J. Oefner and Georg Thaller and Nina Krattenmacher},
	title = {Polymorphisms within the {APOBR} gene are highly associated with milk levels of prognostic ketosis biomarkers in dairy cows},
	journal = {Physiological Genomics}
}



@article{Lehnert_2015,
	doi = {10.1038/srep08484},
	url = {https://doi.org/10.1038%2Fsrep08484},
	year = 2015,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {5},
	number = {1},
	author = {Klaus Lehnert and Hamish Ward and Sarah D. Berry and Alex Ankersmit-Udy and Alayna Burrett and Elizabeth M. Beattie and Natalie L. Thomas and Bevin Harris and Christine A. Ford and Sharon R. Browning and Pisana Rawson and Gwyneth A. Verkerk and Yvonne van der Does and Linda F. Adams and Stephen R. Davis and T. William Jordan and Alastair K. H. MacGibbon and Richard J. Spelman and Russell G. Snell},
	title = {Phenotypic population screen identifies a new mutation in bovine {DGAT}1 responsible for unsaturated milk fat},
	journal = {Sci Rep}
}



@article{Ali_2015,
	doi = {10.1111/jbg.12147},
	url = {https://doi.org/10.1111%2Fjbg.12147},
	year = 2015,
	month = {mar},
	publisher = {Wiley},
	volume = {132},
	number = {2},
	pages = {187--197},
	author = {A.A. Ali and M.S. Khatkar and H.N. Kadarmideen and P.C. Thomson},
	title = {Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle},
	journal = {J. Anim. Breed. Genet.}
}



@article{Poulsen_2015,
	doi = {10.3168/jds.2014-8829},
	url = {https://doi.org/10.3168%2Fjds.2014-8829},
	year = 2015,
	month = {may},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {5},
	pages = {3496--3501},
	author = {Nina A. Poulsen and Iga Rybicka and Lotte B. Larsen and Albert J. Buitenhuis and Mette K. Larsen},
	title = {Short communication: Genetic variation of riboflavin content in bovine milk},
	journal = {Journal of Dairy Science}
}



@article{Pausch_2015,
	doi = {10.3168/jds.2015-9402},
	url = {https://doi.org/10.3168%2Fjds.2015-9402},
	year = 2015,
	month = {jun},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {6},
	pages = {4162--4167},
	author = {Hubert Pausch and Christine Wurmser and Friedrich Reinhardt and Reiner Emmerling and Ruedi Fries},
	title = {Short communication: Validation of 4 candidate causative trait variants in 2 cattle breeds using targeted sequence imputation},
	journal = {Journal of Dairy Science}
}



@article{Zhang_2015,
	doi = {10.1095/biolreprod.114.126672},
	url = {https://doi.org/10.1095%2Fbiolreprod.114.126672},
	year = 2015,
	month = {jun},
	publisher = {Oxford University Press ({OUP})},
	volume = {92},
	number = {6},
	author = {Shuai Zhang and Yan Zhang and Chunhong Yang and Wei Zhang and Zhihua Ju and Xiuge Wang and Qiang Jiang and Yan Sun and Jinming Huang and Jifeng Zhong and Changfa Wang},
	title = {{TNP}1 Functional {SNPs} in bta-{miR}-532 and bta-{miR}-204 Target Sites Are Associated with Semen Quality Traits in Chinese Holstein Bulls1},
	journal = {Biology of Reproduction}
}



@article{Sahana_2015,
	doi = {10.1186/s12863-015-0202-3},
	url = {https://doi.org/10.1186%2Fs12863-015-0202-3},
	year = 2015,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Goutam Sahana and Johanna K Höglund and Bernt Guldbrandtsen and Mogens S Lund},
	title = {Loci associated with adult stature also affect calf birth survival in cattle},
	journal = {BMC Genetics}
}



@article{Chen_2015,
	doi = {10.1017/s1751731115000658},
	url = {https://doi.org/10.1017%2Fs1751731115000658},
	year = 2015,
	publisher = {Elsevier {BV}},
	volume = {9},
	number = {8},
	pages = {1285--1297},
	author = {N.B. Chen and Y. Ma and T. Yang and F. Lin and W.W. Fu and Y.J. Xu and F. Li and J.Y. Li and S.X. Gao},
	title = {Tissue expression and predicted protein structures of the bovine {ANGPTL}3 and association of novel {SNPs} with growth and meat quality traits},
	journal = {Animal}
}



@article{de_Camargo_2015,
	doi = {10.1186/s12864-015-1595-0},
	url = {https://doi.org/10.1186%2Fs12864-015-1595-0},
	year = 2015,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Greg{\'{o}}rio Miguel Ferreira de Camargo and Laercio R Porto-Neto and Matthew J Kelly and Rowan J Bunch and Sean M McWilliam and Humberto Tonhati and Sigrid A Lehnert and Marina R S Fortes and Stephen S Moore},
	title = {Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle},
	journal = {BMC Genomics}
}



@article{Buitenhuis_2015,
	doi = {10.1186/s12863-015-0209-9},
	url = {https://doi.org/10.1186%2Fs12863-015-0209-9},
	year = 2015,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Bart Buitenhuis and Nina A Poulsen and Lotte B Larsen and Jakob Sehested},
	title = {Estimation of genetic parameters and detection of quantitative trait loci for minerals in Danish Holstein and Danish Jersey milk},
	journal = {BMC Genetics}
}



@article{Capomaccio_2015,
	doi = {10.1111/age.12303},
	url = {https://doi.org/10.1111%2Fage.12303},
	year = 2015,
	month = {may},
	publisher = {Wiley},
	volume = {46},
	number = {4},
	pages = {361--370},
	author = {Stefano Capomaccio and Marco Milanesi and Lorenzo Bomba and Katia Cappelli and Ezequiel L. Nicolazzi and John L. Williams and Paolo Ajmone-Marsan and Bruno Stefanon},
	title = {Searching new signals for production traits through gene-based association analysis in three Italian cattle breeds},
	journal = {Anim Genet}
}



@article{Falomir_Lockhart_2015,
	doi = {10.1016/j.meatsci.2015.05.005},
	url = {https://doi.org/10.1016%2Fj.meatsci.2015.05.005},
	year = 2015,
	month = {oct},
	publisher = {Elsevier {BV}},
	volume = {108},
	pages = {17--20},
	author = {A.H. Falomir-Lockhart and A. Rogberg-Mu{\~{n}}oz and J. Papaleo-Mazzucco and D.E. Goszczynski and J.P. Lir{\'{o}}n and M.E. Fern{\'{a}}ndez and M.C. A{\~{n}}on and L.M. Melucci and G. Giovambattista},
	title = {Study of the influence of genes related to muscle oxidative processes on beef color},
	journal = {Meat Science}
}



@article{Santana_2015,
	doi = {10.1111/jbg.12167},
	url = {https://doi.org/10.1111%2Fjbg.12167},
	year = 2015,
	month = {may},
	publisher = {Wiley},
	volume = {132},
	number = {6},
	pages = {420--427},
	author = {M.H.A. Santana and R.V. Ventura and Y.T. Utsunomiya and H.H.R. Neves and P.A. Alexandre and G.A. Oliveira Junior and R.C. Gomes and M.N. Bonin and L.L. Coutinho and J.F. Garcia and S.L. Silva and H. Fukumasu and P.R. Leme and J.B.S. Ferraz},
	title = {A genomewide association mapping study using ultrasound-scanned information identifies potential genomic regions and candidate genes affecting carcass traits in Nellore cattle},
	journal = {J. Anim. Breed. Genet.}
}



@article{Keele_2015,
	doi = {10.2527/jas.2014-8492},
	url = {https://doi.org/10.2527%2Fjas.2014-8492},
	year = 2015,
	publisher = {Oxford University Press ({OUP})},
	volume = {93},
	number = {3},
	pages = {956},
	author = {J. W. Keele and L. A. Kuehn and T. G. McDaneld and R. G. Tait and S. A. Jones and T. P. L. Smith and S. D. Shackelford and D. A. King and T. L. Wheeler and A. K. Lindholm-Perry and A. K. McNeel},
	title = {Genomewide association study of lung lesions in cattle using sample pooling},
	journal = {Journal of Animal Science}
}



@article{Psaros_2015,
	doi = {10.2527/jas.2014-8509},
	url = {https://doi.org/10.2527%2Fjas.2014-8509},
	year = 2015,
	publisher = {Oxford University Press ({OUP})},
	volume = {93},
	number = {3},
	pages = {978},
	author = {K. M. Psaros and T. G. McDaneld and L. A. Kuehn and W. M. Snelling and J. W. Keele},
	title = {Evaluation of single nucleotide polymorphisms in chromosomal regions impacting pregnancy status in cattle},
	journal = {Journal of Animal Science}
}



@article{Horodyska_2015,
	doi = {10.1016/j.meatsci.2015.04.019},
	url = {https://doi.org/10.1016%2Fj.meatsci.2015.04.019},
	year = 2015,
	month = {oct},
	publisher = {Elsevier {BV}},
	volume = {108},
	pages = {88--96},
	author = {J. Horodyska and T. Sweeney and M. Ryan and R.M. Hamill},
	title = {Novel {SNPs} in the Ankyrin 1 gene and their association with beef quality traits},
	journal = {Meat Science}
}



@article{Suchocki_2015,
	doi = {10.3168/jds.2014-8951},
	url = {https://doi.org/10.3168%2Fjds.2014-8951},
	year = 2015,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {8},
	pages = {5774--5780},
	author = {T. Suchocki and J. Szyda},
	title = {Genome-wide association study for semen production traits in Holstein-Friesian bulls},
	journal = {Journal of Dairy Science}
}



@article{Purfield_2015,
	doi = {10.1186/s12711-015-0126-4},
	url = {https://doi.org/10.1186%2Fs12711-015-0126-4},
	year = 2015,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {47},
	number = {1},
	author = {Deirdre C Purfield and Daniel G Bradley and Ross D Evans and Francis J Kearney and Donagh P Berry},
	title = {Genome-wide association study for calving performance using high-density genotypes in dairy and beef cattle},
	journal = {Genet Sel Evol}
}



@article{Li_2015,
	doi = {10.5713/ajas.15.0077},
	url = {https://doi.org/10.5713%2Fajas.15.0077},
	year = 2015,
	month = {may},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {28},
	number = {7},
	pages = {926--935},
	author = {Yi Li and Jong-Joo Kim},
	title = {Multiple Linkage Disequilibrium Mapping Methods to Validate Additive Quantitative Trait Loci in Korean Native Cattle (Hanwoo)},
	journal = {Asian Australas. J. Anim. Sci}
}



@article{Maurice_Van_Eijndhoven_2015,
	doi = {10.3168/jds.2014-9196},
	url = {https://doi.org/10.3168%2Fjds.2014-9196},
	year = 2015,
	month = {sep},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {9},
	pages = {6510--6521},
	author = {M.H.T. Maurice-Van Eijndhoven and H. Bovenhuis and R.F. Veerkamp and M.P.L. Calus},
	title = {Overlap in genomic variation associated with milk fat composition in Holstein Friesian and Dutch native dual-purpose breeds},
	journal = {Journal of Dairy Science}
}



@article{Aliloo_2015,
	doi = {10.1186/s12863-015-0241-9},
	url = {https://doi.org/10.1186%2Fs12863-015-0241-9},
	year = 2015,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Hassan Aliloo and Jennie E. Pryce and Oscar Gonz{\'{a}}lez-Recio and Benjamin G. Cocks and Ben J. Hayes},
	title = {Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows},
	journal = {BMC Genetics}
}



@article{Paredes_S_nchez_2015,
	doi = {10.1186/s12863-015-0247-3},
	url = {https://doi.org/10.1186%2Fs12863-015-0247-3},
	year = 2015,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Francisco Alejandro Paredes-S{\'{a}}nchez and Ana Mar{\'{\i}}a Sifuentes-Rinc{\'{o}}n and Aldo Segura Cabrera and Carlos Armando Garc{\'{\i}}a P{\'{e}}rez and Gaspar Manuel Parra Bracamonte and Pascuala Ambriz Morales},
	title = {Associations of {SNPs} located at candidate genes to bovine growth traits, prioritized with an interaction networks construction approach},
	journal = {BMC Genetics}
}



@article{Dikmen_2015,
	doi = {10.1111/jbg.12176},
	url = {https://doi.org/10.1111%2Fjbg.12176},
	year = 2015,
	month = {jul},
	publisher = {Wiley},
	volume = {132},
	number = {6},
	pages = {409--419},
	author = {S. Dikmen and X.-z. Wang and M.S. Ortega and J.B. Cole and D.J. Null and P.J. Hansen},
	title = {Single nucleotide polymorphisms associated with thermoregulation in lactating dairy cows exposed to heat stress},
	journal = {J. Anim. Breed. Genet.}
}



@article{Costa_2015,
	doi = {10.1186/s12711-015-0146-0},
	url = {https://doi.org/10.1186%2Fs12711-015-0146-0},
	year = 2015,
	month = {aug},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {47},
	number = {1},
	author = {Raphael B. Costa and Greg{\'{o}}rio MF Camargo and Iara DPS Diaz and Natalia Irano and Marina M. Dias and Roberto Carvalheiro and Arione A. Boligon and Fernando Baldi and Henrique N. Oliveira and Humberto Tonhati and Lucia G. Albuquerque},
	title = {Genome-wide association study of reproductive traits in Nellore heifers using Bayesian inference},
	journal = {Genet Sel Evol}
}



@article{Li_2015,
	doi = {10.3168/jds.2015-9383},
	url = {https://doi.org/10.3168%2Fjds.2015-9383},
	year = 2015,
	month = {nov},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {11},
	pages = {8152--8163},
	author = {X. Li and A.J. Buitenhuis and M.S. Lund and C. Li and D. Sun and Q. Zhang and N.A. Poulsen and G. Su},
	title = {Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations},
	journal = {Journal of Dairy Science}
}



@article{H_glund_2015,
	doi = {10.1186/s12863-015-0269-x},
	url = {https://doi.org/10.1186%2Fs12863-015-0269-x},
	year = 2015,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Johanna K. Höglund and Bart Buitenhuis and Bernt Guldbrandtsen and Mogens S. Lund and Goutam Sahana},
	title = {Genome-wide association study for female fertility in Nordic Red cattle},
	journal = {BMC Genetics}
}



@article{Wang_2015,
	doi = {10.1186/s12863-015-0263-3},
	url = {https://doi.org/10.1186%2Fs12863-015-0263-3},
	year = 2015,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Xiao Wang and Peipei Ma and Jianfeng Liu and Qin Zhang and Yuan Zhang and Xiangdong Ding and Li Jiang and Yachun Wang and Yi Zhang and Dongxiao Sun and Shengli Zhang and Guosheng Su and Ying Yu},
	title = {Genome-wide association study in Chinese Holstein cows reveal two candidate genes for somatic cell score as an indicator for mastitis susceptibility},
	journal = {BMC Genetics}
}



@article{Yang_2015,
	doi = {10.1111/age.12332},
	url = {https://doi.org/10.1111%2Fage.12332},
	year = 2015,
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	author = {S. Yang and C. Li and Y. Xie and X. Cui and X. Li and J. Wei and Y. Zhang and Y. Yu and Y. Wang and S. Zhang and Q. Zhang and D. Sun},
	title = {Detection of functional polymorphisms influencing the promoter activity of {theSAA}2gene and their association with milk production traits in Chinese Holstein cows},
	journal = {Anim Genet}
}



@article{Sasaki_2015,
	doi = {10.1111/age.12360},
	url = {https://doi.org/10.1111%2Fage.12360},
	year = 2015,
	month = {sep},
	publisher = {Wiley},
	volume = {47},
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	author = {Shinji Sasaki and Takayuki Ibi and Takatoshi Kojima and Yoshikazu Sugimoto},
	title = {A genome-wide association study reveals a quantitative trait locus for days open on chromosome 2 in Japanese Black cattle},
	journal = {Anim Genet}
}



@article{Espigolan_2015,
	doi = {10.4238/2015.september.22.7},
	url = {https://doi.org/10.4238%2F2015.september.22.7},
	year = 2015,
	publisher = {Genetics and Molecular Research},
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	number = {3},
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	author = {R. Espigolan and F. Baldi and A.A. Boligon and F.R.P. Souza and G.A. Fernandes J{\'{u}}nior and D.G.M. Gordo and G.C. Venturini and G.M.F. de Camargo and F.L.B. Feitosa and D.A. Garcia and H. Tonhati and L.A.L. Chardulo and H.N. Oliveira and L.G. Albuquerque},
	title = {Associations between single nucleotide polymorphisms and carcass traits in Nellore cattle using high-density panels},
	journal = {Genet. Mol. Res.}
}



@article{Kadri_2015,
	doi = {10.3168/jds.2015-9599},
	url = {https://doi.org/10.3168%2Fjds.2015-9599},
	year = 2015,
	month = {dec},
	publisher = {American Dairy Science Association},
	volume = {98},
	number = {12},
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	author = {Naveen K. Kadri and Bernt Guldbrandtsen and Mogens S. Lund and Goutam Sahana},
	title = {Genetic dissection of milk yield traits and mastitis resistance quantitative trait loci on chromosome 20 in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Crispim_2015,
	doi = {10.1371/journal.pone.0139906},
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	year = 2015,
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	author = {Aline Camporez Crispim and Matthew John Kelly and Simone Eliza Facioni Guimar{\~{a}}es and Fabyano Fonseca e Silva and Marina Rufino Salinas Fortes and Raphael Rocha Wenceslau and Stephen Moore},
	editor = {Rongling Wu},
	title = {Multi-Trait {GWAS} and New Candidate Genes Annotation for Growth Curve Parameters in Brahman Cattle},
	journal = {PLoS ONE}
}



@article{Akanno_2015,
	doi = {10.1139/gen-2015-0031},
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	year = 2015,
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	editor = {A. Civetta},
	title = {Genome-wide association for heifer reproduction and calf performance traits in beef cattle},
	journal = {Genome}
}



@article{Sasaki_2015,
	doi = {10.1186/s12863-015-0282-0},
	url = {https://doi.org/10.1186%2Fs12863-015-0282-0},
	year = 2015,
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	volume = {16},
	number = {1},
	author = {Shinji Sasaki and Takayuki Ibi and Tamako Matsuhashi and Kenji Takeda and Shogo Ikeda and Mayumi Sugimoto and Yoshikazu Sugimoto},
	title = {Genetic variants in the upstream region of activin receptor {IIA} are associated with female fertility in Japanese Black cattle},
	journal = {BMC Genetics}
}



@article{Friedrich_2015,
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	year = 2015,
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	title = {Detection of genetic variants affecting cattle behaviour and their impact on milk production: a genome-wide association study},
	journal = {Anim Genet}
}



@article{Yang_2015,
	doi = {10.3390/ijms161125976},
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	year = 2015,
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	title = {Validation of {PDE}9A Gene Identified in {GWAS} Showing Strong Association with Milk Production Traits in Chinese Holstein},
	journal = {IJMS}
}



@article{Moore_2016,
	doi = {10.1095/biolreprod.115.132951},
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	title = {Differentially Expressed Genes in Endometrium and Corpus Luteum of Holstein Cows Selected for High and Low Fertility Are Enriched for Sequence Variants Associated with Fertility1},
	journal = {Biology of Reproduction}
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@article{Ryu_2016,
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	journal = {Animal}
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@article{Porto_Neto_2015,
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	title = {Genome-wide association for the outcome of fixed-time artificial insemination of Brahman heifers in northern Australia1},
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@article{Blecha_2015,
	doi = {10.4238/2015.december.9.3},
	url = {https://doi.org/10.4238%2F2015.december.9.3},
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}



@article{Jevsinek_Skok_2015,
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	year = 2015,
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	title = {{FTOgene} variants are associated with growth and carcass traits in cattle},
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}



@article{Barto__2016,
	doi = {10.1016/j.meatsci.2015.12.004},
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	journal = {Meat Science}
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@article{Papaleo_Mazzucco_2016,
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	title = {Growth, carcass and meat quality traits in beef from Angus, Hereford and cross-breed grazing steers, and their association with {SNPs} in genes related to fat deposition metabolism},
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}



@article{Pausch_2016,
	doi = {10.1186/s12711-016-0190-4},
	url = {https://doi.org/10.1186%2Fs12711-016-0190-4},
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	title = {A multi-trait meta-analysis with imputed sequence variants reveals twelve {QTL} for mammary gland morphology in Fleckvieh cattle},
	journal = {Genet Sel Evol}
}



@article{Mapholi_2016,
	doi = {10.1016/j.ttbdis.2016.02.005},
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	title = {Genome-wide association study of tick resistance in South African Nguni cattle},
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}



@article{Nascimento_2016,
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	title = {Genome wide association study on early puberty in Bos indicus},
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}



@article{Ortega_2016,
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	url = {https://doi.org/10.1111%2Fage.12420},
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	title = {Use of single nucleotide polymorphisms in candidate genes associated with daughter pregnancy rate for prediction of genetic merit for reproduction in Holstein cows},
	journal = {Anim Genet}
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@article{Dadousis_2016,
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	title = {Genome-wide association of coagulation properties, curd firmness modeling, protein percentage, and acidity in milk from Brown Swiss cows},
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}



@article{Karaca_ren_2015,
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@article{Richardson_2016,
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	title = {A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility {QTL} on chromosome 23},
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}



@article{Li_2016,
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	journal = {Anim Genet}
}



@article{Pegolo_2016,
	doi = {10.3168/jds.2015-10420},
	url = {https://doi.org/10.3168%2Fjds.2015-10420},
	year = 2016,
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	journal = {Journal of Dairy Science}
}



@article{Iso_Touru_2016,
	doi = {10.1186/s12863-016-0363-8},
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	title = {Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants},
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}



@article{Goszczynski_2016,
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	url = {https://doi.org/10.1186%2Fs40781-016-0095-3},
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	title = {Genetic characterisation of {PPARG}, {CEBPA} and {RXRA}, and their influence on meat quality traits in cattle},
	journal = {J Anim Sci Technol}
}



@article{Hill_2016,
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	journal = {Genet. Mol. Res.}
}



@article{Keele_2016,
	doi = {10.2527/jas.2015-9887},
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	title = {Genomewide association study of liver abscess in beef cattle1,2},
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}



@article{Lipkin_2016,
	doi = {10.1371/journal.pone.0153423},
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	editor = {Peter J. Hansen},
	title = {The Use of Kosher Phenotyping for Mapping {QTL} Affecting Susceptibility to Bovine Respiratory Disease},
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}



@article{Cui_2016,
	doi = {10.1530/rep-15-0535},
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	year = 2016,
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	title = {A g.-1256 A$\greater$C in the promoter region of {CAPN}1 is associated with semen quality traits in Chinese Holstein bulls},
	journal = {Reproduction}
}



@article{Szewczuk_2016,
	doi = {10.1111/jbg.12216},
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	year = 2016,
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	title = {Polymorphism in exon 2 encoding the putative ligand binding pocket of the bovine insulin-like growth factor 1 receptor affects milk traits in four different cattle breeds},
	journal = {J. Anim. Breed. Genet.}
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@article{Sasago_2016,
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	title = {Genome-wide association study for carcass traits, fatty acid composition, chemical composition, sugar, and the effects of related candidate genes in Japanese Black cattle},
	journal = {Anim Sci J}
}



@article{Xia_2016,
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	year = 2016,
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	title = {Genome-wide association study identifies loci and candidate genes for meat quality traits in Simmental beef cattle},
	journal = {Mamm Genome}
}



@article{Bertelsen_2016,
	doi = {10.2527/jas.2015-9884},
	url = {https://doi.org/10.2527%2Fjas.2015-9884},
	year = 2016,
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	title = {Detection of genetic variation affecting milk coagulation properties in Danish Holstein dairy cattle by analyses of pooled whole-genome sequences from phenotypically extreme samples (pool-seq)1},
	journal = {Journal of Animal Science}
}



@article{Riley_2016,
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	number = {4},
	pages = {1408--1414},
	author = {D. G. Riley and C. A. Gill and C. R. Boldt and R. R. Funkhouser and A. D. Herring and P. K. Riggs and J. E. Sawyer and D. K. Lunt and J. O. Sanders},
	title = {Crossbred Bos indicus steer temperament as yearlings and whole genome association of steer temperament as yearlings and calf temperament post-weaning12},
	journal = {Journal of Animal Science}
}



@article{Mao_2016,
	doi = {10.2527/jas.2015-9838},
	url = {https://doi.org/10.2527%2Fjas.2015-9838},
	year = 2016,
	month = {apr},
	publisher = {Oxford University Press ({OUP})},
	volume = {94},
	number = {4},
	pages = {1426--1437},
	author = {X. Mao and G. Sahana and D.-J. De Koning and B. Guldbrandtsen},
	title = {Genome-wide association studies of growth traits in three dairy cattle breeds using whole-genome sequence data1},
	journal = {Journal of Animal Science}
}



@article{Tenghe_2016,
	doi = {10.3168/jds.2015-10533},
	url = {https://doi.org/10.3168%2Fjds.2015-10533},
	year = 2016,
	month = {jul},
	publisher = {American Dairy Science Association},
	volume = {99},
	number = {7},
	pages = {5470--5485},
	author = {A.M.M. Tenghe and A.C. Bouwman and B. Berglund and E. Strandberg and D.J. de Koning and R.F. Veerkamp},
	title = {Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Parker_Gaddis_2016,
	doi = {10.3168/jds.2015-10444},
	url = {https://doi.org/10.3168%2Fjds.2015-10444},
	year = 2016,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {99},
	number = {8},
	pages = {6420--6435},
	author = {K.L. Parker Gaddis and D.J. Null and J.B. Cole},
	title = {Explorations in genome-wide association studies and network analyses with dairy cattle fertility traits},
	journal = {Journal of Dairy Science}
}



@article{Li_2016,
	doi = {10.5713/ajas.16.0170},
	url = {https://doi.org/10.5713%2Fajas.16.0170},
	year = 2016,
	month = {may},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {30},
	number = {1},
	pages = {8--19},
	author = {Yi Li and Yuxuan Gao and You-Sam Kim and Asif Iqbal and Jong-Joo Kim},
	title = {A whole genome association study to detect additive and dominant single nucleotide polymorphisms for growth and carcass traits in Korean native cattle, Hanwoo},
	journal = {Asian-Australas J Anim Sci}
}



@article{Kami_ski_2016,
	doi = {10.1016/j.anireprosci.2016.05.002},
	url = {https://doi.org/10.1016%2Fj.anireprosci.2016.05.002},
	year = 2016,
	month = {jul},
	publisher = {Elsevier {BV}},
	volume = {170},
	pages = {135--140},
	author = {Stanis{\l}aw Kami{\'{n}}ski and Dorota M. Hering and Kamil Ole{\'{n}}ski and Marek Lecewicz and W{\l}adys{\l}aw Kordan},
	title = {Genome-wide association study for sperm membrane integrity in frozen-thawed semen of Holstein-Friesian bulls},
	journal = {Animal Reproduction Science}
}



@article{Brym_2016,
	doi = {10.1016/j.vetimm.2016.04.012},
	url = {https://doi.org/10.1016%2Fj.vetimm.2016.04.012},
	year = 2016,
	month = {jul},
	publisher = {Elsevier {BV}},
	volume = {175},
	pages = {24--35},
	author = {P. Brym and B. Bojaroj{\'{c}}-Nosowicz and K. Ole{\'{n}}ski and D.M. Hering and A. Ru{\'{s}}{\'{c}} and E. Kaczmarczyk and S. Kami{\'{n}}ski},
	title = {Genome-wide association study for host response to bovine leukemia virus in Holstein cows},
	journal = {Veterinary Immunology and Immunopathology}
}



@article{Bhaladhare_2016,
	doi = {10.14202/vetworld.2016.458-464},
	url = {https://doi.org/10.14202%2Fvetworld.2016.458-464},
	year = 2016,
	month = {may},
	publisher = {Veterinary World},
	volume = {9},
	number = {5},
	pages = {458--464},
	author = {Ashish Bhaladhare and Deepak Sharma and Amit Kumar and Arvind Sonwane and Anuj Chauhan and Ranvir Singh and Pushpendra Kumar and Ramji Yadav and Mohd Baqir and Bharat Bhushan and Om Prakash},
	title = {Single nucleotide polymorphisms in toll-like receptor genes and case-control association studies with bovine tuberculosis},
	journal = {Vet World}
}



@article{Vall_e_2016,
	doi = {10.2527/jas.2016-0319},
	url = {https://doi.org/10.2527%2Fjas.2016-0319},
	year = 2016,
	month = {jun},
	publisher = {Oxford University Press ({OUP})},
	volume = {94},
	number = {6},
	pages = {2307--2316},
	author = {A. Vall{\'{e}}e and J. Daures and J. A. M. van Arendonk and H. Bovenhuis},
	title = {Genome-wide association study for behavior, type traits, and muscular development in Charolais beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Nayeri_2016,
	doi = {10.1186/s12863-016-0386-1},
	url = {https://doi.org/10.1186%2Fs12863-016-0386-1},
	year = 2016,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {Shadi Nayeri and Mehdi Sargolzaei and Mohammed K. Abo-Ismail and Natalie May and Stephen P. Miller and Flavio Schenkel and Stephen S. Moore and Paul Stothard},
	title = {Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle},
	journal = {BMC Genetics}
}



@article{Zhang_2016,
	doi = {10.3168/jds.2015-10697},
	url = {https://doi.org/10.3168%2Fjds.2015-10697},
	year = 2016,
	month = {sep},
	publisher = {American Dairy Science Association},
	volume = {99},
	number = {9},
	pages = {7289--7298},
	author = {Qianqian Zhang and Bernt Guldbrandtsen and J{\o}rn Rind Thomasen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {Genome-wide association study for longevity with whole-genome sequencing in 3 cattle breeds},
	journal = {Journal of Dairy Science}
}



@article{Sorbolini_2016,
	doi = {10.1111/jbg.12227},
	url = {https://doi.org/10.1111%2Fjbg.12227},
	year = 2016,
	month = {jun},
	publisher = {Wiley},
	volume = {134},
	number = {1},
	pages = {43--48},
	author = {S. Sorbolini and S. Bongiorni and M. Cellesi and G. Gaspa and C. Dimauro and A. Valentini and N.P.P. Macciotta},
	title = {Genome wide association study on beef production traits in Marchigiana cattle breed},
	journal = {J. Anim. Breed. Genet.}
}



@article{Wu_2016,
	doi = {10.3168/jds.2015-10705},
	url = {https://doi.org/10.3168%2Fjds.2015-10705},
	year = 2016,
	month = {sep},
	publisher = {American Dairy Science Association},
	volume = {99},
	number = {9},
	pages = {7221--7231},
	author = {Xiaoping Wu and Bernt Guldbrandtsen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {Association analysis for feet and legs disorders with whole-genome sequence variants in 3 dairy cattle breeds},
	journal = {Journal of Dairy Science}
}



@article{Silva_2016,
	doi = {10.1371/journal.pone.0157711},
	url = {https://doi.org/10.1371%2Fjournal.pone.0157711},
	year = 2016,
	month = {jun},
	publisher = {Public Library of Science ({PLoS})},
	volume = {11},
	number = {6},
	pages = {e0157711},
	author = {Vinicius Henrique da Silva and Luciana Correia de Almeida Regitano and Ludwig Geistlinger and F{\'{a}}bio P{\'{e}}rtille and Poliana Fernanda Giachetto and Ricardo Augusto Brassaloti and Nat{\'{a}}lia Silva Morosini and Ralf Zimmer and Luiz Lehmann Coutinho},
	editor = {Roberta Davoli},
	title = {Genome-Wide Detection of {CNVs} and Their Association with Meat Tenderness in Nelore Cattle},
	journal = {PLoS ONE}
}



@article{Royer_2016,
	doi = {10.4238/gmr.15028280},
	url = {https://doi.org/10.4238%2Fgmr.15028280},
	year = 2016,
	publisher = {Genetics and Molecular Research},
	volume = {15},
	number = {2},
	author = {A.M. Royer and C. Shivers and D.G. Riley and M.A. Elzo and M.D. Garcia},
	title = {Single nucleotide polymorphisms associated with carcass traits in a population of Brahman and Brahman-influenced steers},
	journal = {Genet. Mol. Res.}
}



@article{Li_2016,
	doi = {10.1186/s12863-016-0418-x},
	url = {https://doi.org/10.1186%2Fs12863-016-0418-x},
	year = 2016,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {Cong Li and Dongxiao Sun and Shengli Zhang and Shaohua Yang and M. A. Alim and Qin Zhang and Yanhua Li and Lin Liu},
	title = {Genetic effects of {FASN}, {PPARGC}1A, {ABCG}2 and {IGF}1 revealing the association with milk fatty acids in a Chinese Holstein cattle population based on a post genome-wide association study},
	journal = {BMC Genetics}
}



@article{Buitenhuis_2016,
	doi = {10.1186/s12863-016-0421-2},
	url = {https://doi.org/10.1186%2Fs12863-016-0421-2},
	year = 2016,
	month = {aug},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {Bart Buitenhuis and Nina A. Poulsen and Grum Gebreyesus and Lotte B. Larsen},
	title = {Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle},
	journal = {BMC Genet}
}



@article{Ibeagha_Awemu_2016,
	doi = {10.1038/srep31109},
	url = {https://doi.org/10.1038%2Fsrep31109},
	year = 2016,
	month = {aug},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {6},
	number = {1},
	author = {Eveline M. Ibeagha-Awemu and Sunday O. Peters and Kingsley A. Akwanji and Ikhide G. Imumorin and Xin Zhao},
	title = {High density genome wide genotyping-by-sequencing and association identifies common and low frequency {SNPs}, and novel candidate genes influencing cow milk traits},
	journal = {Sci Rep}
}



@article{Biffani_2017,
	doi = {10.1017/s1751731116001750},
	url = {https://doi.org/10.1017%2Fs1751731116001750},
	year = 2017,
	publisher = {Elsevier {BV}},
	volume = {11},
	number = {4},
	pages = {574--579},
	author = {S. Biffani and M. Del Corvo and R. Capoferri and A. Pedretti and M. Luini and J.L. Williams and G. Pagnacco and F. Minvielle and G. Minozzi},
	title = {An alternative experimental case{\textendash}control design for genetic association studies on bovine mastitis},
	journal = {Animal}
}



@article{Puglisi_2016,
	doi = {10.1111/rda.12747},
	url = {https://doi.org/10.1111%2Frda.12747},
	year = 2016,
	month = {aug},
	publisher = {Wiley},
	volume = {51},
	number = {5},
	pages = {840--843},
	author = {R Puglisi and G Gaspa and D Balduzzi and A Severgnini and R Vanni and NPP Macciotta and A Galli},
	title = {Genomewide analysis of bull sperm quality and fertility traits},
	journal = {Reprod Dom Anim}
}



@article{van_den_Berg_2016,
	doi = {10.3168/jds.2016-11073},
	url = {https://doi.org/10.3168%2Fjds.2016-11073},
	year = 2016,
	month = {nov},
	publisher = {American Dairy Science Association},
	volume = {99},
	number = {11},
	pages = {8932--8945},
	author = {Irene van den Berg and Didier Boichard and Mogens Sand{\o} Lund},
	title = {Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds},
	journal = {Journal of Dairy Science}
}



@article{Yang_2016,
	doi = {10.1371/journal.pone.0162195},
	url = {https://doi.org/10.1371%2Fjournal.pone.0162195},
	year = 2016,
	month = {sep},
	publisher = {Public Library of Science ({PLoS})},
	volume = {11},
	number = {9},
	pages = {e0162195},
	author = {Shaohua Yang and Yahui Gao and Shengli Zhang and Qin Zhang and Dongxiao Sun},
	editor = {Marie-Joelle Virolle},
	title = {Identification of Genetic Associations and Functional Polymorphisms of {SAA}1 Gene Affecting Milk Production Traits in Dairy Cattle},
	journal = {PLoS ONE}
}



@article{Qin_2016,
	doi = {10.1111/age.12433},
	url = {https://doi.org/10.1111%2Fage.12433},
	year = 2016,
	month = {sep},
	publisher = {Wiley},
	volume = {48},
	number = {1},
	pages = {80--84},
	author = {Chunhua Qin and Hongwei Yin and Xu Zhang and Dongxiao Sun and Qin Zhang and Jianfeng Liu and Xiangdong Ding and Yi Zhang and Shengli Zhang},
	title = {Genome-wide association study for semen traits of the bulls in Chinese Holstein},
	journal = {Anim Genet}
}



@article{Hern_ndez_2016,
	doi = {10.4238/gmr.15038449},
	url = {https://doi.org/10.4238%2Fgmr.15038449},
	year = 2016,
	publisher = {Genetics and Molecular Research},
	volume = {15},
	number = {3},
	author = {N. Hern{\'{a}}ndez and J.C. Mart{\'{\i}}nez-Gonz{\'{a}}lez and G.M. Parra-Bracamonte and A.M. Sifuentes-Rinc{\'{o}}n and N. L{\'{o}}pez-Villalobos and S.T. Morris and F. Briones-Encinia and E. Ortega-Rivas and V.I. Pacheco-Contreras and L.A. Meza-Garc{\'{\i}}a},
	title = {Association of polymorphisms in growth hormone and leptin candidate genes with live weight traits of Brahman cattle},
	journal = {Genet. Mol. Res.}
}



@article{Olsen_2016,
	doi = {10.1186/s12711-016-0257-2},
	url = {https://doi.org/10.1186%2Fs12711-016-0257-2},
	year = 2016,
	month = {oct},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {48},
	number = {1},
	author = {Hanne Gro Olsen and Tim Martin Knutsen and Anna M. Lewandowska-Sabat and Harald Grove and Torfinn Nome and Morten Svendsen and Mariann Arnyasi and Marte Sodeland and Kristil K. Sundsaasen and Sandra Rinne Dahl and Bj{\o}rg Heringstad and Hanne H. Hansen and Ingrid Olsaker and Matthew Peter Kent and Sigbj{\o}rn Lien},
	title = {Fine mapping of a {QTL} on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component ({GC}) gene in clinical mastitis and milk production},
	journal = {Genet Sel Evol}
}



@article{Miller_2016,
	doi = {10.4238/gmr.15048861},
	url = {https://doi.org/10.4238%2Fgmr.15048861},
	year = 2016,
	publisher = {Genetics and Molecular Research},
	volume = {15},
	number = {4},
	author = {S.L. Miller and S. Mizell and R. Walker and T. Page and M.D. Garcia},
	title = {Identification of {SNPs} located on {BTA} 6 and {BTA} 20 significantly associated with bovine respiratory disease in crossbred cattle},
	journal = {Genet. Mol. Res.}
}



@article{Kemper_2016,
	doi = {10.1186/s12864-016-3175-3},
	url = {https://doi.org/10.1186%2Fs12864-016-3175-3},
	year = 2016,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {K. E. Kemper and M. D. Littlejohn and T. Lopdell and B. J. Hayes and L. E. Bennett and R. P. Williams and X. Q. Xu and P. M. Visscher and M. J. Carrick and M. E. Goddard},
	title = {Leveraging genetically simple traits to identify small-effect variants for complex phenotypes},
	journal = {BMC Genomics}
}



@article{Santana_2016,
	doi = {10.4238/gmr15048930},
	url = {https://doi.org/10.4238%2Fgmr15048930},
	year = 2016,
	publisher = {Genetics and Molecular Research},
	volume = {15},
	number = {4},
	author = {M.H.A. Santana and M.C. Freua and D.N. Do and R.V. Ventura and H.N. Kadarmideen and J.B.S. Ferraz},
	title = {Systems genetics and genome-wide association approaches for analysis of feed intake, feed efficiency, and performance in beef cattle},
	journal = {Genet. Mol. Res.}
}



@article{Han_2016,
	doi = {10.1186/s12863-016-0454-6},
	url = {https://doi.org/10.1186%2Fs12863-016-0454-6},
	year = 2016,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {17},
	number = {1},
	author = {Yi Han and Francisco Pe{\~{n}}agaricano},
	title = {Unravelling the genomic architecture of bull fertility in Holstein cattle},
	journal = {BMC Genetics}
}



@article{Butty_2017,
	doi = {10.3168/jds.2016-11420},
	url = {https://doi.org/10.3168%2Fjds.2016-11420},
	year = 2017,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {100},
	number = {1},
	pages = {402--411},
	author = {Adrien M. Butty and Mirjam Frischknecht and Birgit Gredler and Stefan Neuenschwander and Jürg Moll and Anna Bieber and Christine F. Baes and Franz R. Seefried},
	title = {Genetic and genomic analysis of hyperthelia in Brown Swiss cattle},
	journal = {Journal of Dairy Science}
}



@article{Kim_2016,
	doi = {10.1111/age.12523},
	url = {https://doi.org/10.1111%2Fage.12523},
	year = 2016,
	month = {nov},
	publisher = {Wiley},
	volume = {48},
	number = {2},
	pages = {251--252},
	author = {Hyun Joo Kim and Aditi Sharma and Soo Hyun Lee and Doo Ho Lee and Da Jeong Lim and Yong Min Cho and Boh Suk Yang and Seung Hwan Lee},
	title = {Genetic association {ofPLAG}1,{SCD},{CYP}7B1andFASNSNPs and their effects on carcass weight, intramuscular fat and fatty acid composition in Hanwoo steers (Korean cattle)},
	journal = {Anim Genet}
}



@article{Dadousis_2017,
	doi = {10.3168/jds.2016-11586},
	url = {https://doi.org/10.3168%2Fjds.2016-11586},
	year = 2017,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {100},
	number = {2},
	pages = {1259--1271},
	author = {C. Dadousis and S. Biffani and C. Cipolat-Gotet and E.L. Nicolazzi and G.J.M. Rosa and D. Gianola and A. Rossoni and E. Santus and G. Bittante and A. Cecchinato},
	title = {Genome-wide association study for cheese yield and curd nutrient recovery in dairy cows},
	journal = {Journal of Dairy Science}
}



@article{Nayeri_2017,
	doi = {10.3168/jds.2016-11770},
	url = {https://doi.org/10.3168%2Fjds.2016-11770},
	year = 2017,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {100},
	number = {2},
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	author = {S. Nayeri and M. Sargolzaei and M.K. Abo-Ismail and S. Miller and F. Schenkel and S.S. Moore and P. Stothard},
	title = {Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Zhang_2016,
	doi = {10.1038/srep38073},
	url = {https://doi.org/10.1038%2Fsrep38073},
	year = 2016,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {6},
	number = {1},
	author = {Wengang Zhang and Junya Li and Yong Guo and Lupei Zhang and Lingyang Xu and Xue Gao and Bo Zhu and Huijiang Gao and Hemin Ni and Yan Chen},
	title = {Multi-strategy genome-wide association studies identify the {DCAF}16-{NCAPG} region as a susceptibility locus for average daily gain in cattle},
	journal = {Sci Rep}
}



@article{Jahuey_Mart_nez_2016,
	doi = {10.2527/jas.2016-0359},
	url = {https://doi.org/10.2527%2Fjas.2016-0359},
	year = 2016,
	month = {nov},
	publisher = {Oxford University Press ({OUP})},
	volume = {94},
	number = {11},
	pages = {4570--4582},
	author = {F. J. Jahuey-Mart{\'{\i}}nez and G. M. Parra-Bracamonte and A. M. Sifuentes-Rinc{\'{o}}n and J. C. Mart{\'{\i}}nez-Gonz{\'{a}}lez and C. Gondro and C. A. Garc{\'{\i}}a-P{\'{e}}rez and L. A. L{\'{o}}pez-Bustamante},
	title = {Genomewide association analysis of growth traits in Charolais beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Pausch_2016,
	doi = {10.1186/s12863-016-0458-2},
	url = {https://doi.org/10.1186%2Fs12863-016-0458-2},
	year = 2016,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
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	number = {1},
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	title = {A nonsense mutation in the {COL}7A1 gene causes epidermolysis bullosa in Vorderwald cattle},
	journal = {BMC Genetics}
}



@article{Garza_Brenner_2016,
	doi = {10.1007/s13353-016-0383-0},
	url = {https://doi.org/10.1007%2Fs13353-016-0383-0},
	year = 2016,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {58},
	number = {3},
	pages = {363--371},
	author = {E. Garza-Brenner and A. M. Sifuentes-Rinc{\'{o}}n and R. D. Randel and F. A. Paredes-S{\'{a}}nchez and G. M. Parra-Bracamonte and W. Arellano Vera and F. A. Rodr{\'{\i}}guez Almeida and A. Segura Cabrera},
	title = {Association of {SNPs} in dopamine and serotonin pathway genes and their interacting genes with temperament traits in Charolais cows},
	journal = {J Appl Genetics}
}



@article{Song_2016,
	doi = {10.1371/journal.pone.0168316},
	url = {https://doi.org/10.1371%2Fjournal.pone.0168316},
	year = 2016,
	month = {dec},
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	author = {Yuxin Song and Lingyang Xu and Yan Chen and Lupei Zhang and Huijiang Gao and Bo Zhu and Hong Niu and Wengang Zhang and Jiangwei Xia and Xue Gao and Junya Li},
	editor = {Qin Zhang},
	title = {Genome-Wide Association Study Reveals the {PLAG}1 Gene for Knuckle, Biceps and Shank Weight in Simmental Beef Cattle},
	journal = {PLoS ONE}
}



@article{Regatieri_2017,
	doi = {10.1016/j.anireprosci.2016.12.009},
	url = {https://doi.org/10.1016%2Fj.anireprosci.2016.12.009},
	year = 2017,
	month = {feb},
	publisher = {Elsevier {BV}},
	volume = {177},
	pages = {88--96},
	author = {Ina{\^{e}} Cristina Regatieri and Arione Augusti Boligon and Raphael Bermal Costa and F{\'{a}}bio Ricardo Pablos de Souza and Fernando Baldi and Luciana Takada and Guilherme Costa Venturini and Greg{\'{o}}rio Miguel Ferreira de Camargo and Gerardo Alves Fernandes and Humberto Tonhati and Henrique Nunes de Oliveira and Lucia Galv{\~{a}}o de Albuquerque},
	title = {Association between single nucleotide polymorphisms and sexual precocity in Nellore heifers},
	journal = {Animal Reproduction Science}
}



@article{Goszczynski_2017,
	doi = {10.1080/10495398.2016.1262868},
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	title = {Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle},
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	title = {Complement component 3: characterization and association with mastitis resistance in Egyptian water buffalo and cattle},
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@article{Macciotta_2017,
	doi = {10.3168/jds.2016-12249},
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	year = 2017,
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	title = {Derivation and genome-wide association study of a principal component-based measure of heat tolerance in dairy cattle},
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@article{Takeshima_2017,
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	title = {Single nucleotide polymorphisms in the bovine {MHC} region of Japanese Black cattle are associated with bovine leukemia virus proviral load},
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@article{Kiser_2017,
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	title = {Genome-wide association analysis of body conformation traits in Mexican Holstein cattle using a mix of sampled and imputed {SNP} genotypes},
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@article{Hamidi_Hay_2017,
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@article{Seabury_2017,
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@article{Viale_2017,
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@article{Yang_2017,
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@article{Buzanskas_2017,
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	month = {aug},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {8},
	number = {1},
	author = {Marcos Eli Buzanskas and Daniela do Amaral Grossi and Ricardo Vieira Ventura and Flavio Schramm Schenkel and Tatiane Cristina Seleguim Chud and Nedenia Bonvino Stafuzza and Luciana Diniz Rola and Sarah Laguna Concei{\c{c}}{\~{a}}o Meirelles and Fabiana Barichello Mokry and Maur{\'{\i}}cio de Alvarenga Mudadu and Roberto Hiroshi Higa and Marcos Vin{\'{\i}}cius Gualberto Barbosa da Silva and Maur{\'{\i}}cio Mello de Alencar and Luciana Correia de Almeida Regitano and Dan{\'{\i}}sio Prado Munari},
	title = {Candidate genes for male and female reproductive traits in Canchim beef cattle},
	journal = {J Animal Sci Biotechnol}
}



@article{Yue_2017,
	doi = {10.1111/age.12593},
	url = {https://doi.org/10.1111%2Fage.12593},
	year = 2017,
	month = {aug},
	publisher = {Wiley},
	volume = {48},
	number = {6},
	pages = {677--681},
	author = {S. J. Yue and Y. Q. Zhao and X. R. Gu and B. Yin and Y. L. Jiang and Z. H. Wang and K. R. Shi},
	title = {A genome-wide association study suggests new candidate genes for milk production traits in Chinese Holstein cattle},
	journal = {Anim Genet}
}



@article{Del_Corvo_2017,
	doi = {10.1007/s00335-017-9714-7},
	url = {https://doi.org/10.1007%2Fs00335-017-9714-7},
	year = 2017,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {28},
	number = {11-12},
	pages = {520--527},
	author = {Marcello Del Corvo and Mario Luini and Alessandra Stella and Giulio Pagnacco and Paolo Ajmone-Marsan and John L. Williams and Giulietta Minozzi},
	title = {Identification of additional loci associated with antibody response to Mycobacterium avium ssp. Paratuberculosis in cattle by {GSEA}{\textendash}{SNP} analysis},
	journal = {Mamm Genome}
}



@article{Duchemin_2017,
	doi = {10.3168/jds.2017-12965},
	url = {https://doi.org/10.3168%2Fjds.2017-12965},
	year = 2017,
	month = {nov},
	publisher = {American Dairy Science Association},
	volume = {100},
	number = {11},
	pages = {9125--9135},
	author = {S.I. Duchemin and H. Bovenhuis and H.-J. Megens and J.A.M. Van Arendonk and M.H.P.W. Visker},
	title = {Fine-mapping of {BTA}17 using imputed sequences for associations with de novo synthesized fatty acids in bovine milk},
	journal = {Journal of Dairy Science}
}



@article{Sanchez_2017,
	doi = {10.1186/s12711-017-0344-z},
	url = {https://doi.org/10.1186%2Fs12711-017-0344-z},
	year = 2017,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {49},
	number = {1},
	author = {Marie-Pierre Sanchez and Armelle Govignon-Gion and Pascal Croiseau and S{\'{e}}bastien Fritz and Chris Hoz{\'{e}} and Guy Miranda and Patrice Martin and Anne Barbat-Leterrier and Rabia Letaïef and Dominique Rocha and Mickaël Brochard and Mekki Boussaha and Didier Boichard},
	title = {Within-breed and multi-breed {GWAS} on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle},
	journal = {Genet Sel Evol}
}



@article{Mei_2018,
	doi = {10.1016/j.meatsci.2017.10.004},
	url = {https://doi.org/10.1016%2Fj.meatsci.2017.10.004},
	year = 2018,
	month = {jan},
	publisher = {Elsevier {BV}},
	volume = {135},
	pages = {166--173},
	author = {Chu-Gang Mei and Lin-Sheng Gui and Hong-Cheng Wang and Wan-Qiang Tian and Yao-Kun Li and Lin-Sen Zan},
	title = {Polymorphisms in adrenergic receptor genes in Qinchuan cattle show associations with selected carcass traits},
	journal = {Meat Science}
}



@article{Edea_2018,
	doi = {10.5713/ajas.17.0276},
	url = {https://doi.org/10.5713%2Fajas.17.0276},
	year = 2018,
	month = {mar},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {31},
	number = {3},
	pages = {327--334},
	author = {Zewdu Edea and Yeong Ho Jeoung and Sung-Sub Shin and Jaeul Ku and Sungbo Seo and Il-Hoi Kim and Sang-Wook Kim and Kwan-Suk Kim},
	title = {Genome{\textendash}wide association study of carcass weight in commercial Hanwoo cattle},
	journal = {Asian-Australas J Anim Sci}
}



@article{Abo_Ismail_2017,
	doi = {10.1186/s12711-017-0356-8},
	url = {https://doi.org/10.1186%2Fs12711-017-0356-8},
	year = 2017,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {49},
	number = {1},
	author = {Mohammed K. Abo-Ismail and Luiz F. Brito and Stephen P. Miller and Mehdi Sargolzaei and Daniela A. Grossi and Steve S. Moore and Graham Plastow and Paul Stothard and Shadi Nayeri and Flavio S. Schenkel},
	title = {Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle},
	journal = {Genet Sel Evol}
}



@article{Pausch_2017,
	doi = {10.1186/s12864-017-4263-8},
	url = {https://doi.org/10.1186%2Fs12864-017-4263-8},
	year = 2017,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {18},
	number = {1},
	author = {Hubert Pausch and Reiner Emmerling and Birgit Gredler-Grandl and Ruedi Fries and Hans D. Daetwyler and Michael E. Goddard},
	title = {Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 {QTL} for fat and protein percentages in milk at nucleotide resolution},
	journal = {BMC Genomics}
}



@article{Bissonnette_2018,
	doi = {10.3168/jds.2017-13129},
	url = {https://doi.org/10.3168%2Fjds.2017-13129},
	year = 2018,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {1},
	pages = {456--461},
	author = {Nathalie Bissonnette},
	title = {Short communication: Genetic association of variations in the osteopontin gene ({SPP}1) with lactation persistency in dairy cattle},
	journal = {Journal of Dairy Science}
}



@article{Parker_Gaddis_2018,
	doi = {10.3168/jds.2017-13383},
	url = {https://doi.org/10.3168%2Fjds.2017-13383},
	year = 2018,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {1},
	pages = {413--424},
	author = {K.L. Parker Gaddis and J.H. Megonigal and J.S. Clay and C.W. Wolfe},
	title = {Genome-wide association study for ketosis in {US} Jerseys using producer-recorded data},
	journal = {Journal of Dairy Science}
}



@article{Mateescu_2017,
	doi = {10.3389/fgene.2017.00171},
	url = {https://doi.org/10.3389%2Ffgene.2017.00171},
	year = 2017,
	month = {nov},
	publisher = {Frontiers Media {SA}},
	volume = {8},
	author = {Raluca G. Mateescu and Dorian J. Garrick and James M. Reecy},
	title = {Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle},
	journal = {Front. Genet.}
}



@article{Frischknecht_2017,
	doi = {10.1186/s12864-017-4308-z},
	url = {https://doi.org/10.1186%2Fs12864-017-4308-z},
	year = 2017,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {18},
	number = {1},
	author = {Mirjam Frischknecht and   and Beat Bapst and Franz R. Seefried and Heidi Signer-Hasler and Dorian Garrick and Christian Stricker and Ruedi Fries and Ingolf Russ and Johann Sölkner and Anna Bieber and Maria G. Strillacci and Birgit Gredler-Grandl and Christine Flury},
	title = {Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences},
	journal = {BMC Genomics}
}



@article{Lehner_2018,
	doi = {10.3168/jds.2017-13216},
	url = {https://doi.org/10.3168%2Fjds.2017-13216},
	year = 2018,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {2},
	pages = {1258--1266},
	author = {S. Lehner and I. Zerbin and K. Doll and J. Rehage and O. Distl},
	title = {A genome-wide association study for left-sided displacement of the abomasum using a high-density single nucleotide polymorphism array},
	journal = {Journal of Dairy Science}
}



@article{Lopdell_2017,
	doi = {10.1186/s12864-017-4320-3},
	url = {https://doi.org/10.1186%2Fs12864-017-4320-3},
	year = 2017,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {18},
	number = {1},
	author = {Thomas J. Lopdell and Kathryn Tiplady and Maksim Struchalin and Thomas J. J. Johnson and Michael Keehan and Ric Sherlock and Christine Couldrey and Stephen R. Davis and Russell G. Snell and Richard J. Spelman and Mathew D. Littlejohn},
	title = {{DNA} and {RNA}-sequence based {GWAS} highlights membrane-transport genes as key modulators of milk lactose content},
	journal = {BMC Genomics}
}



@article{Frischknecht_2017,
	doi = {10.1186/s12864-017-4390-2},
	url = {https://doi.org/10.1186%2Fs12864-017-4390-2},
	year = 2017,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {18},
	number = {1},
	author = {Mirjam Frischknecht and Hubert Pausch and Beat Bapst and Heidi Signer-Hasler and Christine Flury and Dorian Garrick and Christian Stricker and Ruedi Fries and Birgit Gredler-Grandl},
	title = {Highly accurate sequence imputation enables precise {QTL} mapping in Brown Swiss cattle},
	journal = {BMC Genomics}
}



@article{Abdel_Shafy_2018,
	doi = {10.1111/age.12624},
	url = {https://doi.org/10.1111%2Fage.12624},
	year = 2018,
	month = {jan},
	publisher = {Wiley},
	volume = {49},
	number = {1},
	pages = {82--85},
	author = {H. Abdel-Shafy and R. H. Bortfeldt and M. Reissmann and G. A. Brockmann},
	title = {Validating genome-wide associated signals for clinical mastitis in German Holstein cattle},
	journal = {Anim Genet}
}



@article{Nakajima_2018,
	doi = {10.1111/asj.12987},
	url = {https://doi.org/10.1111%2Fasj.12987},
	year = 2018,
	month = {jan},
	publisher = {Wiley},
	volume = {89},
	number = {5},
	pages = {743--751},
	author = {Ayaka Nakajima and Fuki Kawaguchi and Yoshinobu Uemoto and Moriyuki Fukushima and Emi Yoshida and Eiji Iwamoto and Takayuki Akiyama and Namiko Kohama and Eiji Kobayashi and Takeshi Honda and Kenji Oyama and Hideyuki Mannen and Shinji Sasazaki},
	title = {A genome-wide association study for fat-related traits computed by image analysis in Japanese Black cattle},
	journal = {Anim Sci J}
}



@article{Abo_Ismail_2018,
	doi = {10.1093/jas/sky020},
	url = {https://doi.org/10.1093%2Fjas%2Fsky020},
	year = 2018,
	month = {jan},
	publisher = {Oxford University Press ({OUP})},
	volume = {96},
	number = {2},
	pages = {375--397},
	author = {M K Abo-Ismail and N Lansink and E Akanno and B K Karisa and J J Crowley and S S Moore and E Bork and P Stothard and J A Basarab and G S Plastow},
	title = {Development and validation of a small {SNP} panel for feed efficiency in beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Knutsen_2018,
	doi = {10.1038/s41598-018-20476-0},
	url = {https://doi.org/10.1038%2Fs41598-018-20476-0},
	year = 2018,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {8},
	number = {1},
	author = {Tim Martin Knutsen and Hanne Gro Olsen and Valeria Tafintseva and Morten Svendsen and Achim Kohler and Matthew Peter Kent and Sigbj{\o}rn Lien},
	title = {Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids},
	journal = {Sci Rep}
}



@article{Carignano_2018,
	doi = {10.1186/s12864-018-4523-2},
	url = {https://doi.org/10.1186%2Fs12864-018-4523-2},
	year = 2018,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Hugo A. Carignano and Dana L. Roldan and Mar{\'{\i}}a J. Beribe and Mar{\'{\i}}a A. Raschia and Ariel Amadio and Juan P. Nani and Ger{\'{o}}nimo Gutierrez and Irene Alvarez and Karina Trono and Mario A. Poli and Marcos M. Miretti},
	title = {Genome-wide scan for commons {SNPs} affecting bovine leukemia virus infection level in dairy cattle},
	journal = {BMC Genomics}
}



@article{Bouwman_2018,
	doi = {10.1038/s41588-018-0056-5},
	url = {https://doi.org/10.1038%2Fs41588-018-0056-5},
	year = 2018,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {50},
	number = {3},
	pages = {362--367},
	author = {Aniek C. Bouwman and Hans D. Daetwyler and Amanda J. Chamberlain and Carla Hurtado Ponce and Mehdi Sargolzaei and Flavio S. Schenkel and Goutam Sahana and Armelle Govignon-Gion and Simon Boitard and Marlies Dolezal and Hubert Pausch and Rasmus F. Br{\o}ndum and Phil J. Bowman and Bo Thomsen and Bernt Guldbrandtsen and Mogens S. Lund and Bertrand Servin and Dorian J. Garrick and James Reecy and Johanna Vilkki and Alessandro Bagnato and Min Wang and Jesse L. Hoff and Robert D. Schnabel and Jeremy F. Taylor and Anna A. E. Vinkhuyzen and Frank Panitz and Christian Bendixen and Lars-Erik Holm and Birgit Gredler and Chris Hoz{\'{e}} and Mekki Boussaha and Marie-Pierre Sanchez and Dominique Rocha and Aurelien Capitan and Thierry Tribout and Anne Barbat and Pascal Croiseau and Cord Drögemüller and Vidhya Jagannathan and Christy Vander Jagt and John J. Crowley and Anna Bieber and Deirdre C. Purfield and Donagh P. Berry and Reiner Emmerling and Kay-Uwe Götz and Mirjam Frischknecht and Ingolf Russ and Johann Sölkner and Curtis P. Van Tassell and Ruedi Fries and Paul Stothard and Roel F. Veerkamp and Didier Boichard and Mike E. Goddard and Ben J. Hayes},
	title = {Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals},
	journal = {Nat Genet}
}



@article{Magotra_2018,
	doi = {10.1080/10495398.2018.1437046},
	url = {https://doi.org/10.1080%2F10495398.2018.1437046},
	year = 2018,
	month = {feb},
	publisher = {Informa {UK} Limited},
	volume = {30},
	number = {1},
	pages = {75--81},
	author = {Ankit Magotra and I. D. Gupta and Archana Verma and Rani Alex and Vineeth MR and Tavsief Ahmad},
	title = {Candidate {SNP} of {CACNA}2D1 Gene Associated with Clinical Mastitis and Production Traits in Sahiwal (Bos taurus indicus) and Karan Fries (Bos taurus taurus{\hspace{0.167em}}{\texttimes}{\hspace{0.167em}}Bos taurus indicus)},
	journal = {Animal Biotechnology}
}



@article{Speidel_2018,
	doi = {10.1093/jas/sky041},
	url = {https://doi.org/10.1093%2Fjas%2Fsky041},
	year = 2018,
	month = {feb},
	publisher = {Oxford University Press ({OUP})},
	volume = {96},
	number = {3},
	pages = {846--853},
	author = {S E Speidel and B A Buckley and R J Boldt and R M Enns and J Lee and M L Spangler and M G Thomas},
	title = {Genome-wide association study of Stayability and Heifer Pregnancy in Red Angus cattle},
	journal = {Journal of Animal Science}
}



@article{Nicolini_2018,
	doi = {10.1186/s12863-018-0600-4},
	url = {https://doi.org/10.1186%2Fs12863-018-0600-4},
	year = 2018,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Paula Nicolini and Roc{\'{\i}}o Amor{\'{\i}}n and Yi Han and Francisco Pe{\~{n}}agaricano},
	title = {Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle},
	journal = {BMC Genetics}
}



@article{Leal_Guti_rrez_2018,
	doi = {10.3389/fgene.2018.00056},
	url = {https://doi.org/10.3389%2Ffgene.2018.00056},
	year = 2018,
	month = {feb},
	publisher = {Frontiers Media {SA}},
	volume = {9},
	author = {Joel D. Leal-Guti{\'{e}}rrez and Mauricio A. Elzo and Dwain D. Johnson and Tracy L. Scheffler and Jason M. Scheffler and Raluca G. Mateescu},
	title = {Association of $\upmu$-Calpain and Calpastatin Polymorphisms with Meat Tenderness in a Brahman{\textendash}Angus Population},
	journal = {Front. Genet.}
}



@article{Han_2018,
	doi = {10.1111/age.12651},
	url = {https://doi.org/10.1111%2Fage.12651},
	year = 2018,
	month = {mar},
	publisher = {Wiley},
	volume = {49},
	number = {3},
	pages = {169--177},
	author = {B. Han and W. Liang and L. Liu and Y. Li and D. Sun},
	title = {Genetic association of the {ACACB}
		 gene with milk yield and composition traits in dairy cattle},
	journal = {Anim Genet}
}



@article{Anton_2018,
	doi = {10.5713/ajas.17.0773},
	url = {https://doi.org/10.5713%2Fajas.17.0773},
	year = 2018,
	month = {sep},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {31},
	number = {9},
	pages = {1415--1419},
	author = {Istv{\'{a}}n Anton and Bal{\'{a}}zs H{\'{u}}th and Imre Füller and L{\'{a}}szl{\'{o}} R{\'{o}}zsa and Gabriella Holl{\'{o}} and Attila Zsolnai},
	title = {Effect of single nucleotide polymorphisms on intramuscular fat content in Hungarian Simmental cattle},
	journal = {Asian-Australas J Anim Sci}
}



@article{Kroezen_2018,
	doi = {10.3168/jds.2017-13374},
	url = {https://doi.org/10.3168%2Fjds.2017-13374},
	year = 2018,
	month = {jun},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {6},
	pages = {5240--5249},
	author = {V. Kroezen and F.S. Schenkel and F. Miglior and C.F. Baes and E.J. Squires},
	title = {Candidate gene association analyses for ketosis resistance in Holsteins},
	journal = {Journal of Dairy Science}
}



@article{Kemper_2018,
	doi = {10.1186/s12711-018-0377-y},
	url = {https://doi.org/10.1186%2Fs12711-018-0377-y},
	year = 2018,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {50},
	number = {1},
	author = {Kathryn E. Kemper and Philip J. Bowman and Benjamin J. Hayes and Peter M. Visscher and Michael E. Goddard},
	title = {A multi-trait Bayesian method for mapping {QTL} and genomic prediction},
	journal = {Genet Sel Evol}
}



@article{Ning_2018,
	doi = {10.1186/s12711-018-0383-0},
	url = {https://doi.org/10.1186%2Fs12711-018-0383-0},
	year = 2018,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {50},
	number = {1},
	author = {Chao Ning and Dan Wang and Xianrui Zheng and Qin Zhang and Shengli Zhang and Raphael Mrode and Jian-Feng Liu},
	title = {Eigen decomposition expedites longitudinal genome-wide association studies for milk production traits in Chinese Holstein},
	journal = {Genet Sel Evol}
}



@article{Naderi_2018,
	doi = {10.1111/age.12661},
	url = {https://doi.org/10.1111%2Fage.12661},
	year = 2018,
	month = {apr},
	publisher = {Wiley},
	volume = {49},
	number = {3},
	pages = {178--192},
	author = {S. Naderi and M. Bohlouli and T. Yin and S. König},
	title = {Genomic breeding values, {SNP} effects and gene identification for disease traits in cow training sets},
	journal = {Anim Genet}
}



@article{Jecminkova_2018,
	doi = {10.5713/ajas.17.0900},
	url = {https://doi.org/10.5713%2Fajas.17.0900},
	year = 2018,
	month = {nov},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {31},
	number = {11},
	pages = {1721--1728},
	author = {Katerina Jecminkova and Uwe Müller and Jitka Kyselova and Zuzana Sztankoova and Ludmila Zavadilova and Miloslava Stipkova and Ivan Majzlik},
	title = {Association of leptin, toll-like receptor 4, and chemokine receptor of interleukin 8 C-X-C motif single nucleotide polymorphisms with fertility traits in Czech Fleckvieh cattle},
	journal = {Asian-Australas J Anim Sci}
}



@article{An_2018,
	doi = {10.1152/physiolgenomics.00022.2018},
	url = {https://doi.org/10.1152%2Fphysiolgenomics.00022.2018},
	year = 2018,
	month = {jul},
	publisher = {American Physiological Society},
	volume = {50},
	number = {7},
	pages = {523--531},
	author = {Bingxing An and Jiangwei Xia and Tianpeng Chang and Xiaoqiao Wang and Jian Miao and Lingyang Xu and Lupei Zhang and Xue Gao and Yan Chen and Junya Li and Huijiang Gao},
	title = {Genome-wide association study identifies loci and candidate genes for internal organ weights in Simmental beef cattle},
	journal = {Physiological Genomics}
}



@article{Miao_2018,
	doi = {10.1111/jbg.12326},
	url = {https://doi.org/10.1111%2Fjbg.12326},
	year = 2018,
	month = {apr},
	publisher = {Wiley},
	volume = {135},
	number = {3},
	pages = {159--169},
	author = {J. Miao and X. Wang and J. Bao and S. Jin and T. Chang and J. Xia and L. Yang and B. Zhu and L. Xu and L. Zhang and X. Gao and Y. Chen and J. Li and H. Gao},
	title = {Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle},
	journal = {J Anim Breed Genet}
}



@article{Marete_2018,
	doi = {10.3168/jds.2017-14067},
	url = {https://doi.org/10.3168%2Fjds.2017-14067},
	year = 2018,
	month = {jul},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {7},
	pages = {6205--6219},
	author = {Andrew Marete and Goutam Sahana and S{\'{e}}bastien Fritz and Rachel Lefebvre and Anne Barbat and Mogens Sand{\o} Lund and Bernt Guldbrandtsen and Didier Boichard},
	title = {Genome-wide association study for milking speed in French Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Gobikrushanth_2018,
	doi = {10.3168/jds.2017-13940},
	url = {https://doi.org/10.3168%2Fjds.2017-13940},
	year = 2018,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {8},
	pages = {7563--7574},
	author = {M. Gobikrushanth and D.C. Purfield and M.G. Colazo and S.T. Butler and Z. Wang and D.J. Ambrose},
	title = {The relationship between serum anti-Müllerian hormone concentrations and fertility, and genome-wide associations for anti-Müllerian hormone in Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Vargas_2018,
	doi = {10.1093/jas/sky079},
	url = {https://doi.org/10.1093%2Fjas%2Fsky079},
	year = 2018,
	month = {apr},
	publisher = {Oxford University Press ({OUP})},
	volume = {96},
	number = {5},
	pages = {1617--1627},
	author = {Giovana Vargas and Haroldo H R Neves and Greg{\'{o}}rio Miguel F Camargo and V{\^{a}}nia Cardoso and Dan{\'{\i}}sio P Munari and Roberto Carvalheiro},
	title = {Genome-wide association study and functional analysis of feet and leg conformation traits in Nellore cattle},
	journal = {Journal of Animal Science}
}



@article{Cai_2018,
	doi = {10.1186/s12863-018-0620-0},
	url = {https://doi.org/10.1186%2Fs12863-018-0620-0},
	year = 2018,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Zexi Cai and Bernt Guldbrandtsen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {{RETRACTED} {ARTICLE}: Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle},
	journal = {BMC Genetics}
}



@article{Mallikarjunappa_2018,
	doi = {10.3168/jds.2018-14388},
	url = {https://doi.org/10.3168%2Fjds.2018-14388},
	year = 2018,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {8},
	pages = {7280--7286},
	author = {Sanjay Mallikarjunappa and M. Sargolzaei and L.F. Brito and K.G. Meade and N.A. Karrow and S.D. Pant},
	title = {Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel},
	journal = {Journal of Dairy Science}
}



@article{Jaton_2018,
	doi = {10.3168/jds.2017-13848},
	url = {https://doi.org/10.3168%2Fjds.2017-13848},
	year = 2018,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {8},
	pages = {7248--7257},
	author = {C. Jaton and F.S. Schenkel and M. Sargolzaei and A. C{\'{a}}nova and F. Malchiodi and C.A. Price and C. Baes and F. Miglior},
	title = {Genome-wide association study and in silico functional analysis of the number of embryos produced by Holstein donors},
	journal = {Journal of Dairy Science}
}



@article{Sasago_2018,
	doi = {10.1111/asj.13030},
	url = {https://doi.org/10.1111%2Fasj.13030},
	year = 2018,
	month = {may},
	publisher = {Wiley},
	volume = {89},
	number = {8},
	pages = {1051--1059},
	author = {Nanae Sasago and Masayuki Takeda and Tsuyoshi Ohtake and Tsuyoshi Abe and Hironori Sakuma and Takatoshi Kojima and Shinji Sasaki and Yoshinobu Uemoto},
	title = {Genome-wide association studies identified variants for taurine concentration in Japanese Black beef},
	journal = {Anim Sci J}
}



@article{Kawaguchi_2018,
	doi = {10.1111/asj.13035},
	url = {https://doi.org/10.1111%2Fasj.13035},
	year = 2018,
	month = {may},
	publisher = {Wiley},
	volume = {89},
	number = {8},
	pages = {1060--1066},
	author = {Fuki Kawaguchi and Hiroto Kigoshi and Ayaka Nakajima and Yuta Matsumoto and Yoshinobu Uemoto and Moriyuki Fukushima and Emi Yoshida and Eiji Iwamoto and Takayuki Akiyama and Namiko Kohama and Eiji Kobayashi and Takeshi Honda and Kenji Oyama and Hideyuki Mannen and Shinji Sasazaki},
	title = {Pool-based genome-wide association study identified novel candidate regions on {BTA}9 and 14 for oleic acid percentage in Japanese Black cattle},
	journal = {Anim Sci J}
}



@article{Chen_2018,
	doi = {10.1016/j.gene.2018.05.073},
	url = {https://doi.org/10.1016%2Fj.gene.2018.05.073},
	year = 2018,
	month = {sep},
	publisher = {Elsevier {BV}},
	volume = {670},
	pages = {123--129},
	author = {Si Chen and Menglin Chai and Chen Tian and Yuzhuang Li and Tian Deng and Hui Wu and Xiaolin Liu},
	title = {Genetic variants of fatty acid elongase 6 in Chinese Holstein cow},
	journal = {Gene}
}



@article{Fang_2018,
	doi = {10.1038/s41598-018-27729-y},
	url = {https://doi.org/10.1038%2Fs41598-018-27729-y},
	year = 2018,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {8},
	number = {1},
	author = {Lingzhao Fang and Peter S{\o}rensen and Goutam Sahana and Frank Panitz and Guosheng Su and Shengli Zhang and Ying Yu and Bingjie Li and Li Ma and George Liu and Mogens Sand{\o} Lund and Bo Thomsen},
	title = {{MicroRNA}-guided prioritization of genome-wide association signals reveals the importance of {microRNA}-target gene networks for complex traits in cattle},
	journal = {Sci Rep}
}



@article{Leyva_Corona_2018,
	doi = {10.1007/s11250-018-1645-0},
	url = {https://doi.org/10.1007%2Fs11250-018-1645-0},
	year = 2018,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {50},
	number = {8},
	pages = {1913--1920},
	author = {Jose C. Leyva-Corona and Javier R. Reyna-Granados and Ricardo Zamorano-Algandar and Miguel A. Sanchez-Castro and Milton G. Thomas and R. Mark Enns and Scott E. Speidel and Juan F. Medrano and Gonzalo Rincon and Pablo Luna-Nevarez},
	title = {Polymorphisms within the prolactin and growth hormone/insulin-like growth factor-1 functional pathways associated with fertility traits in Holstein cows raised in a hot-humid climate},
	journal = {Trop Anim Health Prod}
}



@article{Chang_2018,
	doi = {10.1111/age.12667},
	url = {https://doi.org/10.1111%2Fage.12667},
	year = 2018,
	month = {jun},
	publisher = {Wiley},
	volume = {49},
	number = {4},
	pages = {312--316},
	author = {T. Chang and J. Xia and L. Xu and X. Wang and B. Zhu and L. Zhang and X. Gao and Y. Chen and J. Li and H. Gao},
	title = {A genome-wide association study suggests several novel candidate genes for carcass traits in Chinese Simmental beef cattle},
	journal = {Anim Genet}
}



@article{Marete_2018,
	doi = {10.1371/journal.pone.0199931},
	url = {https://doi.org/10.1371%2Fjournal.pone.0199931},
	year = 2018,
	month = {jul},
	publisher = {Public Library of Science ({PLoS})},
	volume = {13},
	number = {7},
	pages = {e0199931},
	author = {Andrew Marete and Mogens Sand{\o} Lund and Didier Boichard and Yuliaxis Ramayo-Caldas},
	editor = {Juan J Loor},
	title = {A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds},
	journal = {PLoS ONE}
}



@article{Bhuiyan_2018,
	doi = {10.3389/fgene.2018.00217},
	url = {https://doi.org/10.3389%2Ffgene.2018.00217},
	year = 2018,
	month = {jun},
	publisher = {Frontiers Media {SA}},
	volume = {9},
	author = {Mohammad S. A. Bhuiyan and Dajeong Lim and Mina Park and Soohyun Lee and Yeongkuk Kim and Cedric Gondro and Byoungho Park and Seunghwan Lee},
	title = {Functional Partitioning of Genomic Variance and Genome-Wide Association Study for Carcass Traits in Korean Hanwoo Cattle Using Imputed Sequence Level {SNP} Data},
	journal = {Front. Genet.}
}



@article{Nawaz_2018,
	doi = {10.3168/jds.2018-14798},
	url = {https://doi.org/10.3168%2Fjds.2018-14798},
	year = 2018,
	month = {sep},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {9},
	pages = {8063--8075},
	author = {M.Y. Nawaz and F. Jimenez-Krassel and J.P. Steibel and Y. Lu and A. Baktula and N. Vukasinovic and L. Neuder and J.L.H. Ireland and J.J. Ireland and R.J. Tempelman},
	title = {Genomic heritability and genome-wide association analysis of anti-Müllerian hormone in Holstein dairy heifers},
	journal = {Journal of Dairy Science}
}



@article{Fu_2018,
	doi = {10.1111/rda.13244},
	url = {https://doi.org/10.1111%2Frda.13244},
	year = 2018,
	month = {jul},
	publisher = {Wiley},
	volume = {53},
	number = {5},
	pages = {1227--1234},
	author = {Weiwei Fu and Ningbo Chen and Shuang Han and Jieping Huang and Fen Li and Ruijie Hao and Hong Chen and Chuzhao Lei and Yun Ma},
	title = {Tissue expression and variation analysis of three bovine adipokine genes revealed their effect on growth traits in native Chinese cattle},
	journal = {Reprod Dom Anim}
}



@article{Gobikrushanth_2018,
	doi = {10.3168/jds.2018-14535},
	url = {https://doi.org/10.3168%2Fjds.2018-14535},
	year = 2018,
	month = {oct},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {10},
	pages = {9154--9167},
	author = {M. Gobikrushanth and D.C. Purfield and M.G. Colazo and Z. Wang and S.T. Butler and D.J. Ambrose},
	title = {The relationship between serum insulin-like growth factor-1 ({IGF}-1) concentration and reproductive performance, and genome-wide associations for serum {IGF}-1 in Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Weller_2018,
	doi = {10.3168/jds.2018-14816},
	url = {https://doi.org/10.3168%2Fjds.2018-14816},
	year = 2018,
	month = {oct},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {10},
	pages = {9089--9107},
	author = {J.I. Weller and D.M. Bickhart and G.R. Wiggans and M.E. Tooker and J.R. O{\textquotesingle}Connell and J. Jiang and M. Ron and P.M. VanRaden},
	title = {Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of {US} Holsteins},
	journal = {Journal of Dairy Science}
}



@article{Melo_2018,
	doi = {10.1093/jas/sky289},
	url = {https://doi.org/10.1093%2Fjas%2Fsky289},
	year = 2018,
	month = {jul},
	publisher = {Oxford University Press ({OUP})},
	volume = {96},
	number = {10},
	pages = {4087--4099},
	author = {Thaise P Melo and Marina R S Fortes and Tiago Bresolin and Lucio F M Mota and Lucia G Albuquerque and Roberto Carvalheiro},
	title = {Multitrait meta-analysis identified genomic regions associated with sexual precocity in tropical beef cattle1},
	journal = {Journal of Animal Science}
}



@article{Sallam_2018,
	doi = {10.1016/j.meegid.2018.07.035},
	url = {https://doi.org/10.1016%2Fj.meegid.2018.07.035},
	year = 2018,
	month = {nov},
	publisher = {Elsevier {BV}},
	volume = {65},
	pages = {163--169},
	author = {Ahmed M. Sallam and Yalda Zare and George Shook and Michael Collins and Brian W. Kirkpatrick},
	title = {A positional candidate gene association analysis of susceptibility to paratuberculosis on bovine chromosome 7},
	journal = {Infection, Genetics and Evolution}
}



@article{Gui_2019,
	doi = {10.5713/ajas.18.0079},
	url = {https://doi.org/10.5713%2Fajas.18.0079},
	year = 2019,
	month = {jan},
	publisher = {Asian Australasian Association of Animal Production Societies},
	volume = {32},
	number = {1},
	pages = {58--62},
	author = {Lin-sheng Gui and Sayed Haidar Abbas Raza and Jianlei Jia},
	title = {Analysis of the oxidized low density lipoprotein receptor 1 gene as a potential marker for carcass quality traits in Qinchuan cattle},
	journal = {Asian-Australas J Anim Sci}
}



@article{Zeng_2018,
	doi = {10.1111/age.12702},
	url = {https://doi.org/10.1111%2Fage.12702},
	year = 2018,
	month = {aug},
	publisher = {Wiley},
	volume = {49},
	number = {5},
	pages = {447--451},
	author = {L. Zeng and N. Chen and Q. Ning and Y. Yao and H. Chen and R. Dang and H. Zhang and C. Lei},
	title = {{PRLH}
		 and {SOD}1
		 gene variations associated with heat tolerance in Chinese cattle},
	journal = {Anim Genet}
}



@article{Wang_2018,
	doi = {10.1017/s0022029918000535},
	url = {https://doi.org/10.1017%2Fs0022029918000535},
	year = 2018,
	month = {aug},
	publisher = {Cambridge University Press ({CUP})},
	volume = {85},
	number = {4},
	pages = {407--411},
	author = {Mengqi Wang and Hailiang Song and Xiaorui Zhu and Shiyu Xing and Meirong Zhang and Huimin Zhang and Xiaolong Wang and Zhangping Yang and Xiangdong Ding and Niel A. Karrow and Sven König and Yongjiang Mao},
	title = {Toll-like receptor 4 gene polymorphisms influence milk production traits in Chinese Holstein cows},
	journal = {Journal of Dairy Research}
}



@article{Rezende_2018,
	doi = {10.1111/age.12710},
	url = {https://doi.org/10.1111%2Fage.12710},
	year = 2018,
	month = {aug},
	publisher = {Wiley},
	volume = {49},
	number = {5},
	pages = {393--402},
	author = {F. M. Rezende and G. O. Dietsch and F. Pe{\~{n}}agaricano},
	title = {Genetic dissection of bull fertility in {US} Jersey dairy cattle},
	journal = {Anim Genet}
}



@article{Do_2018,
	doi = {10.1038/s41598-018-31427-0},
	url = {https://doi.org/10.1038%2Fs41598-018-31427-0},
	year = 2018,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {8},
	number = {1},
	author = {Duy N. Do and Flavio S. Schenkel and Filippo Miglior and Xin Zhao and Eveline M. Ibeagha-Awemu},
	title = {Genome wide association study identifies novel potential candidate genes for bovine milk cholesterol content},
	journal = {Sci Rep}
}



@article{Cai_2018,
	doi = {10.1186/s12864-018-5050-x},
	url = {https://doi.org/10.1186%2Fs12864-018-5050-x},
	year = 2018,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Zexi Cai and Bernt Guldbrandtsen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {Prioritizing candidate genes post-{GWAS} using multiple sources of data for mastitis resistance in dairy cattle},
	journal = {BMC Genomics}
}



@article{Neupane_2018,
	doi = {10.1111/age.12718},
	url = {https://doi.org/10.1111%2Fage.12718},
	year = 2018,
	month = {sep},
	publisher = {Wiley},
	volume = {49},
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	author = {M. Neupane and J. N. Kiser and H. L. Neibergs and},
	title = {Gene set enrichment analysis of {SNP} data in dairy and beef cattle with bovine respiratory disease},
	journal = {Anim Genet}
}



@article{de_Klerk_2018,
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	url = {https://doi.org/10.1186%2Fs12864-018-5062-6},
	year = 2018,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
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	number = {1},
	author = {Britt de Klerk and Mehdi Emam and Kathleen A. Thompson-Crispi and Mehdi Sargolzaei and Johan J. van der Poel and Bonnie A. Mallard},
	title = {A genome-wide association study for natural antibodies measured in blood of Canadian Holstein cows},
	journal = {BMC Genomics}
}



@article{Palombo_2018,
	doi = {10.3168/jds.2018-14413},
	url = {https://doi.org/10.3168%2Fjds.2018-14413},
	year = 2018,
	month = {dec},
	publisher = {American Dairy Science Association},
	volume = {101},
	number = {12},
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	author = {V. Palombo and M. Milanesi and S. Sgorlon and S. Capomaccio and M. Mele and E. Nicolazzi and P. Ajmone-Marsan and F. Pilla and B. Stefanon and M. D{\textquotesingle}Andrea},
	title = {Genome-wide association study of milk fatty acid composition in Italian Simmental and Italian Holstein cows using single nucleotide polymorphism arrays},
	journal = {Journal of Dairy Science}
}



@article{Higgins_2018,
	doi = {10.1038/s41598-018-32374-6},
	url = {https://doi.org/10.1038%2Fs41598-018-32374-6},
	year = 2018,
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	publisher = {Springer Science and Business Media {LLC}},
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	author = {Marc G. Higgins and Claire Fitzsimons and Matthew C. McClure and Clare McKenna and Stephen Conroy and David A. Kenny and Mark McGee and Sin{\'{e}}ad M. Waters and Derek W. Morris},
	title = {{GWAS} and {eQTL} analysis identifies a {SNP} associated with both residual feed intake and {GFRA}2 expression in beef cattle},
	journal = {Sci Rep}
}



@article{Bhuiyan_2018,
	doi = {10.1093/jas/sky280},
	url = {https://doi.org/10.1093%2Fjas%2Fsky280},
	year = 2018,
	month = {sep},
	publisher = {Oxford University Press ({OUP})},
	volume = {96},
	number = {10},
	pages = {4063--4075},
	author = {Mohammad S A Bhuiyan and Yeong Kuk Kim and Hyun Joo Kim and Doo Ho Lee and Soo Hyun Lee and Ho Baek Yoon and Seung Hwan Lee},
	title = {Genome-wide association study and prediction of genomic breeding values for fatty-acid composition in Korean Hanwoo cattle using a high-density single-nucleotide polymorphism array1},
	journal = {Journal of Animal Science}
}



@article{Kurz_2018,
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	year = 2018,
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	publisher = {Springer Science and Business Media {LLC}},
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	author = {Jacqueline P. Kurz and Zhou Yang and Robert B. Weiss and David J. Wilson and Kerry A. Rood and George E. Liu and Zhongde Wang},
	title = {A genome-wide association study for mastitis resistance in phenotypically well-characterized Holstein dairy cattle using a selective genotyping approach},
	journal = {Immunogenetics}
}



@article{Akanno_2018,
	doi = {10.1186/s12711-018-0405-y},
	url = {https://doi.org/10.1186%2Fs12711-018-0405-y},
	year = 2018,
	month = {oct},
	publisher = {Springer Science and Business Media {LLC}},
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	author = {Everestus C. Akanno and Liuhong Chen and Mohammed K. Abo-Ismail and John J. Crowley and Zhiquan Wang and Changxi Li and John A. Basarab and Michael D. MacNeil and Graham S. Plastow},
	title = {Genome-wide association scan for heterotic quantitative trait loci in multi-breed and crossbred beef cattle},
	journal = {Genet Sel Evol}
}



@article{Pszczola_2018,
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	year = 2018,
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	number = {1},
	author = {M. Pszczola and T. Strabel and S. Mucha and E. Sell-Kubiak},
	title = {Genome-wide association identifies methane production level relation to genetic control of digestive tract development in dairy cows},
	journal = {Sci Rep}
}



@article{Marete_2018,
	doi = {10.3389/fgene.2018.00522},
	url = {https://doi.org/10.3389%2Ffgene.2018.00522},
	year = 2018,
	month = {nov},
	publisher = {Frontiers Media {SA}},
	volume = {9},
	author = {Andrew G. Marete and Bernt Guldbrandtsen and Mogens S. Lund and S{\'{e}}bastien Fritz and Goutam Sahana and Didier Boichard},
	title = {A Meta-Analysis Including Pre-selected Sequence Variants Associated With Seven Traits in Three French Dairy Cattle Populations},
	journal = {Front. Genet.}
}



@article{Hofstetter_2018,
	doi = {10.1111/age.12751},
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	year = 2018,
	month = {dec},
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	author = {S. Hofstetter and F. Seefried and I.M. Häfliger and V. Jagannathan and T. Leeb and C. Drögemüller},
	title = {A non-coding regulatory variant in the 5$\prime$-region of the {MITF}
		 gene is associated with white-spotted coat in Brown Swiss cattle},
	journal = {Anim Genet}
}



@article{Raschia_2018,
	doi = {10.1186/s40781-018-0189-1},
	url = {https://doi.org/10.1186%2Fs40781-018-0189-1},
	year = 2018,
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	publisher = {Springer Science and Business Media {LLC}},
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	number = {1},
	author = {Mar{\'{\i}}a Agustina Raschia and Juan Pablo Nani and Daniel Omar Maizon and Mar{\'{\i}}a Jos{\'{e}} Beribe and Ariel Fernando Amadio and Mario Andr{\'{e}}s Poli},
	title = {Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows},
	journal = {J Anim Sci Technol}
}



@article{Wen_2018,
	doi = {10.1080/10495398.2018.1531015},
	url = {https://doi.org/10.1080%2F10495398.2018.1531015},
	year = 2018,
	month = {dec},
	publisher = {Informa {UK} Limited},
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	number = {1},
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	author = {Yi-Fan Wen and Li Zheng and Hui Niu and Guo-Liang Zhang and Gui-Min Zhang and Yi-Lei Ma and Yi-Ran Tian and Yan-Rong Liu and Peng Yang and Di-Yi Yang and Chu-Zhao Lei and Rui-Hua Dang and Xing-Lei Qi and Hong Chen and Bi-Zhi Huang and Yong-Zhen Huang},
	title = {Exploring genotype{\textendash}phenotype relationships of the {CRABP}2 gene on growth traits in beef cattle},
	journal = {Animal Biotechnology}
}



@article{Kiser_2018,
	doi = {10.1093/jas/sky482},
	url = {https://doi.org/10.1093%2Fjas%2Fsky482},
	year = 2018,
	month = {dec},
	publisher = {Oxford University Press ({OUP})},
	volume = {97},
	number = {3},
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	author = {Jennifer Nicole Kiser and Macy A Cornmesser and Kevin Gavin and Alea Hoffman and Dale A Moore and Holly L Neibergs},
	title = {Rapid Communication: Genome-wide association analyses identify loci associated with colostrum production in Jersey cattle1},
	journal = {Journal of Animal Science}
}



@article{Zhong_2019,
	doi = {10.1016/j.gene.2018.12.018},
	url = {https://doi.org/10.1016%2Fj.gene.2018.12.018},
	year = 2019,
	month = {mar},
	publisher = {Elsevier {BV}},
	volume = {689},
	pages = {166--171},
	author = {Jia-Lin Zhong and Jia-Wei Xu and Jian Wang and Yi-fan Wen and Hui Niu and Li Zheng and Hua He and Kun Peng and Pan He and Shu-Yue Shi and Yin-Qi Huang and Chu-Zhao Lei and Rui-Hua Dang and Xian-Yong Lan and Xing-Lei Qi and Hong Chen and Yong-Zhen Huang},
	title = {A novel {SNP} of {PLAG}1 gene and its association with growth traits in Chinese cattle},
	journal = {Gene}
}



@article{Gao_2018,
	doi = {10.1186/s12864-018-5385-3},
	url = {https://doi.org/10.1186%2Fs12864-018-5385-3},
	year = 2018,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {19},
	number = {1},
	author = {Yahui Gao and Jianping Jiang and Shaohua Yang and Jie Cao and Bo Han and Yachun Wang and Yi Zhang and Ying Yu and Shengli Zhang and Qin Zhang and Lingzhao Fang and Bonnie Cantrell and Dongxiao Sun},
	title = {Genome-wide association study of Mycobacterium avium subspecies Paratuberculosis infection in Chinese Holstein},
	journal = {BMC Genomics}
}



@article{Gobikrushanth_2019,
	doi = {10.3168/jds.2018-15552},
	url = {https://doi.org/10.3168%2Fjds.2018-15552},
	year = 2019,
	month = {feb},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {2},
	pages = {1702--1711},
	author = {M. Gobikrushanth and D.C. Purfield and J. Kenneally and R.C. Doyle and S.A. Holden and P.M. Martinez and E.Rojas Canadas and T.C. Bruinj{\'{e}} and M.G. Colazo and D.J. Ambrose and S.T. Butler},
	title = {The relationship between anogenital distance and fertility, and genome-wide associations for anogenital distance in Irish Holstein-Friesian cows},
	journal = {Journal of Dairy Science}
}



@article{Xu_2019,
	doi = {10.1186/s12864-018-5403-5},
	url = {https://doi.org/10.1186%2Fs12864-018-5403-5},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Lingyang Xu and Liu Yang and Lei Wang and Bo Zhu and Yan Chen and Huijiang Gao and Xue Gao and Lupei Zhang and George E. Liu and Junya Li},
	title = {Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle},
	journal = {BMC Genomics}
}



@article{Wang_2019,
	doi = {10.3168/jds.2018-15298},
	url = {https://doi.org/10.3168%2Fjds.2018-15298},
	year = 2019,
	month = {mar},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {3},
	pages = {2378--2383},
	author = {Dan Wang and Chao Ning and Jian-Feng Liu and Qin Zhang and Li Jiang},
	title = {Short communication: Replication of genome-wide association studies for milk production traits in Chinese Holstein by an efficient rotated linear mixed model},
	journal = {Journal of Dairy Science}
}



@article{Braz_2019,
	doi = {10.1186/s12863-019-0713-4},
	url = {https://doi.org/10.1186%2Fs12863-019-0713-4},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Camila U. Braz and Jeremy F. Taylor and Tiago Bresolin and Rafael Espigolan and Fabieli L. B. Feitosa and Roberto Carvalheiro and Fernando Baldi and Lucia G. de Albuquerque and Henrique N. de Oliveira},
	title = {Sliding window haplotype approaches overcome single {SNP} analysis limitations in identifying genes for meat tenderness in Nelore cattle},
	journal = {BMC Genetics}
}



@article{Duarte_2019,
	doi = {10.1111/age.12761},
	url = {https://doi.org/10.1111%2Fage.12761},
	year = 2019,
	month = {jan},
	publisher = {Wiley},
	volume = {50},
	number = {2},
	pages = {150--153},
	author = {D. A. S. Duarte and C. J. Newbold and E. Detmann and F. F. Silva and P. H. F. Freitas and R. Veroneze and M. S. Duarte},
	title = {Genome-wide association studies pathway-based meta-analysis for residual feed intake in beef cattle},
	journal = {Anim Genet}
}



@article{Lopdell_2019,
	doi = {10.1186/s12711-019-0446-x},
	url = {https://doi.org/10.1186%2Fs12711-019-0446-x},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {51},
	number = {1},
	author = {Thomas J. Lopdell and Kathryn Tiplady and Christine Couldrey and Thomas J. J. Johnson and Michael Keehan and Stephen R. Davis and Bevin L. Harris and Richard J. Spelman and Russell G. Snell and Mathew D. Littlejohn},
	title = {Multiple {QTL} underlie milk phenotypes at the {CSF}2RB locus},
	journal = {Genet Sel Evol}
}



@article{Kumar_2019,
	doi = {10.1016/j.rvsc.2019.01.016},
	url = {https://doi.org/10.1016%2Fj.rvsc.2019.01.016},
	year = 2019,
	month = {apr},
	publisher = {Elsevier {BV}},
	volume = {123},
	pages = {216--222},
	author = {Satish Kumar and Subodh Kumar and Ran Vir Singh and Anuj Chauhan and Amit Kumar and Jaya Bharati and Shoor Vir Singh},
	title = {Association of Bovine {CLEC}7A gene polymorphism with host susceptibility to paratuberculosis disease in Indian cattle},
	journal = {Research in Veterinary Science}
}



@article{Shi_2019,
	doi = {10.3390/genes10020086},
	url = {https://doi.org/10.3390%2Fgenes10020086},
	year = 2019,
	month = {jan},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {2},
	pages = {86},
	author = {Lijun Shi and Bo Han and Lin Liu and Xiaoqing Lv and Zhu Ma and Cong Li and Lingna Xu and Yanhua Li and Feng Zhao and Yuze Yang and Dongxiao Sun},
	title = {Determination of Genetic Effects of {LIPK} and {LIPJ} Genes on Milk Fatty Acids in Dairy Cattle},
	journal = {Genes}
}



@article{Cai_2019,
	doi = {10.1186/s12863-019-0717-0},
	url = {https://doi.org/10.1186%2Fs12863-019-0717-0},
	year = 2019,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Zexi Cai and Bernt Guldbrandtsen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle},
	journal = {BMC Genetics}
}



@article{Li_2019,
	doi = {10.3390/genes10020104},
	url = {https://doi.org/10.3390%2Fgenes10020104},
	year = 2019,
	month = {jan},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {2},
	pages = {104},
	author = {Cong Li and Miao Wang and Wentao Cai and Shuli Liu and Chenghao Zhou and Hongwei Yin and Dongxiao Sun and Shengli Zhang},
	title = {Genetic Analyses Confirm {SNPs} in {HSPA}8 and {ERBB}2 are Associated with Milk Protein Concentration in Chinese Holstein Cattle},
	journal = {Genes}
}



@article{Ring_2019,
	doi = {10.1371/journal.pone.0212067},
	url = {https://doi.org/10.1371%2Fjournal.pone.0212067},
	year = 2019,
	month = {feb},
	publisher = {Public Library of Science ({PLoS})},
	volume = {14},
	number = {2},
	pages = {e0212067},
	author = {S. C. Ring and D. C. Purfield and M. Good and P. Breslin and E. Ryan and A. Blom and R. D. Evans and M. L. Doherty and D. G. Bradley and D. P. Berry},
	editor = {Alexie Papanicolaou},
	title = {Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data},
	journal = {PLoS ONE}
}



@article{Kawaguchi_2019,
	doi = {10.1111/asj.13179},
	url = {https://doi.org/10.1111%2Fasj.13179},
	year = 2019,
	month = {feb},
	publisher = {Wiley},
	volume = {90},
	number = {4},
	pages = {467--472},
	author = {Fuki Kawaguchi and Hiroto Kigoshi and Moriyuki Fukushima and Eiji Iwamoto and Eiji Kobayashi and Kenji Oyama and Hideyuki Mannen and Shinji Sasazaki},
	title = {Whole-genome resequencing to identify candidate genes for the
		            {QTL}
		            for oleic acid percentage in Japanese Black cattle},
	journal = {Anim Sci J}
}



@article{Leal_Guti_rrez_2019,
	doi = {10.1186/s12864-019-5518-3},
	url = {https://doi.org/10.1186%2Fs12864-019-5518-3},
	year = 2019,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Joel D. Leal-Guti{\'{e}}rrez and Mauricio A. Elzo and D. Dwain Johnson and Heather Hamblen and Raluca G. Mateescu},
	title = {Genome wide association and gene enrichment analysis reveal membrane anchoring and structural proteins associated with meat quality in beef},
	journal = {BMC Genomics}
}



@article{Li_2019,
	doi = {10.1111/age.12750},
	url = {https://doi.org/10.1111%2Fage.12750},
	year = 2019,
	month = {feb},
	publisher = {Wiley},
	volume = {50},
	number = {2},
	pages = {123--135},
	author = {Y. Li and B. Han and L. Liu and F. Zhao and W. Liang and J. Jiang and Y. Yang and Z. Ma and D. Sun},
	title = {Genetic association of
		            
		              {DDIT}
		              3,
		              {RPL}
		              23A,
		              {SESN}
		              2
		            
		            and
		            
		              {NR}
		              4A1
		            
		            genes with milk yield and composition in dairy cattle},
	journal = {Anim Genet}
}



@article{Zhou_2019,
	doi = {10.3389/fgene.2019.00072},
	url = {https://doi.org/10.3389%2Ffgene.2019.00072},
	year = 2019,
	month = {feb},
	publisher = {Frontiers Media {SA}},
	volume = {10},
	author = {Chenghao Zhou and Cong Li and Wentao Cai and Shuli Liu and Hongwei Yin and Shaolei Shi and Qin Zhang and Shengli Zhang},
	title = {Genome-Wide Association Study for Milk Protein Composition Traits in a Chinese Holstein Population Using a Single-Step Approach},
	journal = {Front. Genet.}
}



@article{Gebreyesus_2019,
	doi = {10.1186/s12864-019-5573-9},
	url = {https://doi.org/10.1186%2Fs12864-019-5573-9},
	year = 2019,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {G. Gebreyesus and A. J. Buitenhuis and N. A. Poulsen and M. H. P. W. Visker and Q. Zhang and H. J. F. van Valenberg and D. Sun and H. Bovenhuis},
	title = {Multi-population {GWAS} and enrichment analyses reveal novel genomic regions and promising candidate genes underlying bovine milk fatty acid composition},
	journal = {BMC Genomics}
}



@article{McGovern_2019,
	doi = {10.3168/jds.2018-15906},
	url = {https://doi.org/10.3168%2Fjds.2018-15906},
	year = 2019,
	month = {may},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {5},
	pages = {4249--4263},
	author = {S.P. McGovern and D.C. Purfield and S.C. Ring and T.R. Carthy and D.A. Graham and D.P. Berry},
	title = {Candidate genes associated with the heritable humoral response to Mycobacterium avium ssp. paratuberculosis in dairy cows have factors in common with gastrointestinal diseases in humans},
	journal = {Journal of Dairy Science}
}



@article{Wang_2019,
	doi = {10.1186/s40104-019-0322-0},
	url = {https://doi.org/10.1186%2Fs40104-019-0322-0},
	year = 2019,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {10},
	number = {1},
	author = {Zezhao Wang and Bo Zhu and Hong Niu and Wengang Zhang and Ling Xu and Lei Xu and Yan Chen and Lupei Zhang and Xue Gao and Huijiang Gao and Shengli Zhang and Lingyang Xu and Junya Li},
	title = {Genome wide association study identifies {SNPs} associated with fatty acid composition in Chinese Wagyu cattle},
	journal = {J Animal Sci Biotechnol}
}



@article{Fang_2019,
	doi = {10.1038/s42003-019-0341-6},
	url = {https://doi.org/10.1038%2Fs42003-019-0341-6},
	year = 2019,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {2},
	number = {1},
	author = {Lingzhao Fang and Jicai Jiang and Bingjie Li and Yang Zhou and Ellen Freebern and Paul M. Vanraden and John B. Cole and George E. Liu and Li Ma},
	title = {Genetic and epigenetic architecture of paternal origin contribute to gestation length in cattle},
	journal = {Commun Biol}
}



@article{Kumar_2019,
	doi = {10.1007/s11259-019-09750-2},
	url = {https://doi.org/10.1007%2Fs11259-019-09750-2},
	year = 2019,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {43},
	number = {2},
	pages = {105--114},
	author = {Satish Kumar and Subodh Kumar and Ran Vir Singh and Anuj Chauhan and Amit Kumar and Sourabh Sulabh and Jaya Bharati and Shoor Vir Singh},
	title = {Genetic association of polymorphisms in bovine {TLR}2 and {TLR}4 genes with Mycobacterium avium subspecies paratuberculosis infection in Indian cattle population},
	journal = {Vet Res Commun}
}



@article{Cai_2019,
	doi = {10.1186/s12864-019-5638-9},
	url = {https://doi.org/10.1186%2Fs12864-019-5638-9},
	year = 2019,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Zexi Cai and Bernt Guldbrandtsen and Mogens Sand{\o} Lund and Goutam Sahana},
	title = {Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression},
	journal = {BMC Genomics}
}



@article{Igoshin_2019,
	doi = {10.1111/age.12786},
	url = {https://doi.org/10.1111%2Fage.12786},
	year = 2019,
	month = {apr},
	publisher = {Wiley},
	volume = {50},
	number = {3},
	pages = {250--253},
	author = {A. V. Igoshin and N. S. Yudin and N. M. Belonogova and D. M. Larkin},
	title = {Genome-wide association study for body weight in cattle populations from Siberia},
	journal = {Anim Genet}
}



@article{May_2019,
	doi = {10.1186/s12864-019-5659-4},
	url = {https://doi.org/10.1186%2Fs12864-019-5659-4},
	year = 2019,
	month = {apr},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Katharina May and Carsten Scheper and Kerstin Brügemann and Tong Yin and Christina Strube and Paula Korku{\'{c}} and Gudrun A. Brockmann and Sven König},
	title = {Genome-wide associations and functional gene analyses for endoparasite resistance in an endangered population of native German Black Pied cattle},
	journal = {BMC Genomics}
}



@article{Kirkpatrick_2019,
	doi = {10.1111/age.12793},
	url = {https://doi.org/10.1111%2Fage.12793},
	year = 2019,
	month = {apr},
	publisher = {Wiley},
	volume = {50},
	number = {3},
	pages = {259--261},
	author = {B. W. Kirkpatrick and R. M. Thallman and L. A. Kuehn},
	title = {Validation of
		            {SNP}
		            associations with bovine ovulation and twinning rate},
	journal = {Anim Genet}
}



@article{Han_2019,
	doi = {10.3390/genes10040265},
	url = {https://doi.org/10.3390%2Fgenes10040265},
	year = 2019,
	month = {apr},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {4},
	pages = {265},
	author = {Bo Han and Yuwei Yuan and Ruobing Liang and Yanhua Li and Lin Liu and Dongxiao Sun},
	title = {Genetic Effects of {LPIN}1 Polymorphisms on Milk Production Traits in Dairy Cattle},
	journal = {Genes}
}



@article{Clancey_2019,
	doi = {10.1111/age.12792},
	url = {https://doi.org/10.1111%2Fage.12792},
	year = 2019,
	month = {apr},
	publisher = {Wiley},
	volume = {50},
	number = {3},
	pages = {254--258},
	author = {E. Clancey and J. N. Kiser and J. G. N. Moraes and J. C. Dalton and T. E. Spencer and H. L. Neibergs},
	title = {Genome-wide association analysis and gene set enrichment analysis with {SNP} data identify genes associated with 305-day milk yield in Holstein dairy cows},
	journal = {Anim Genet}
}



@article{Melo_2019,
	doi = {10.1093/jas/skz121},
	url = {https://doi.org/10.1093%2Fjas%2Fskz121},
	year = 2019,
	month = {apr},
	publisher = {Oxford University Press ({OUP})},
	volume = {97},
	number = {7},
	pages = {3027--3033},
	author = {Thaise P Melo and Marina R S Fortes and Gerardo A Fernandes Junior and Lucia G Albuquerque and Roberto Carvalheiro},
	title = {{RAPID} {COMMUNICATION}: Multi-breed validation study unraveled genomic regions associated with puberty traits segregating across tropically adapted breeds1},
	journal = {Journal of Animal Science}
}



@article{Dreher_2019,
	doi = {10.3168/jds.2019-16487},
	url = {https://doi.org/10.3168%2Fjds.2019-16487},
	year = 2019,
	month = {jul},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {7},
	pages = {6296--6305},
	author = {C. Dreher and R. Wellmann and P. Stratz and M. Schmid and S. Preu{\ss} and H. Hamann and J. Bennewitz},
	title = {Genomic analysis of perinatal sucking reflex in German Brown Swiss calves},
	journal = {Journal of Dairy Science}
}



@article{Klein_2019,
	doi = {10.3168/jds.2019-16237},
	url = {https://doi.org/10.3168%2Fjds.2019-16237},
	year = 2019,
	month = {jul},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {7},
	pages = {6276--6287},
	author = {S.-L. Klein and C. Scheper and K. Brügemann and H.H. Swalve and S. König},
	title = {Phenotypic relationships, genetic parameters, genome-wide associations, and identification of potential candidate genes for ketosis and fat-to-protein ratio in German Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Jiang_2019,
	doi = {10.1186/s12863-019-0749-5},
	url = {https://doi.org/10.1186%2Fs12863-019-0749-5},
	year = 2019,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Qiang Jiang and Han Zhao and Rongling Li and Yaran Zhang and Yong Liu and Jinpeng Wang and Xiuge Wang and Zhihua Ju and Wenhao Liu and Minghai Hou and Jinming Huang},
	title = {In silico genome-wide {miRNA}-{QTL}-{SNPs} analyses identify a functional {SNP} associated with mastitis in Holsteins},
	journal = {BMC Genetics}
}



@article{Jiang_2019,
	doi = {10.3389/fgene.2019.00412},
	url = {https://doi.org/10.3389%2Ffgene.2019.00412},
	year = 2019,
	month = {may},
	publisher = {Frontiers Media {SA}},
	volume = {10},
	author = {Jicai Jiang and Li Ma and Dzianis Prakapenka and Paul M. VanRaden and John B. Cole and Yang Da},
	title = {A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle},
	journal = {Front. Genet.}
}



@article{Chang_2019,
	doi = {10.3390/ani9060305},
	url = {https://doi.org/10.3390%2Fani9060305},
	year = 2019,
	month = {may},
	publisher = {{MDPI} {AG}},
	volume = {9},
	number = {6},
	pages = {305},
	author = {Tianpeng Chang and Julong Wei and Mang Liang and Bingxing An and Xiaoqiao Wang and Bo Zhu and Lingyang Xu and Lupei Zhang and Xue Gao and Yan Chen and Junya Li and Huijiang Gao},
	title = {A Fast and Powerful Empirical Bayes Method for Genome-Wide Association Studies},
	journal = {Animals}
}



@article{Benedet_2019,
	doi = {10.3168/jds.2018-15890},
	url = {https://doi.org/10.3168%2Fjds.2018-15890},
	year = 2019,
	month = {aug},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {8},
	pages = {7189--7203},
	author = {A. Benedet and P.N. Ho and R. Xiang and S. Bolormaa and M. De Marchi and M.E. Goddard and J.E. Pryce},
	title = {The use of mid-infrared spectra to map genes affecting milk composition},
	journal = {Journal of Dairy Science}
}



@article{An_2019,
	doi = {10.1111/age.12805},
	url = {https://doi.org/10.1111%2Fage.12805},
	year = 2019,
	month = {jun},
	publisher = {Wiley},
	volume = {50},
	number = {4},
	pages = {386--390},
	author = {B. An and J. Xia and T. Chang and X. Wang and L. Xu and L. Zhang and X. Gao and Y. Chen and J. Li and H. Gao},
	title = {Genome-wide association study reveals candidate genes associated with body measurement traits in Chinese Wagyu beef cattle},
	journal = {Anim Genet}
}



@article{Han_2019,
	doi = {10.3390/genes10060449},
	url = {https://doi.org/10.3390%2Fgenes10060449},
	year = 2019,
	month = {jun},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {6},
	pages = {449},
	author = {Bo Han and Yuwei Yuan and Yanhua Li and Lin Liu and Dongxiao Sun},
	title = {Single Nucleotide Polymorphisms of {NUCB}2 and Their Genetic Associations with Milk Production Traits in Dairy Cows},
	journal = {Genes}
}



@article{Aguilar_2019,
	doi = {10.1186/s12711-019-0469-3},
	url = {https://doi.org/10.1186%2Fs12711-019-0469-3},
	year = 2019,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {51},
	number = {1},
	author = {Ignacio Aguilar and Andres Legarra and Fernando Cardoso and Yutaka Masuda and Daniela Lourenco and Ignacy Misztal},
	title = {Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle},
	journal = {Genet Sel Evol}
}



@article{Sanchez_2019,
	doi = {10.1186/s12711-019-0473-7},
	url = {https://doi.org/10.1186%2Fs12711-019-0473-7},
	year = 2019,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {51},
	number = {1},
	author = {Marie-Pierre Sanchez and Yuliaxis Ramayo-Caldas and Val{\'{e}}rie Wolf and C{\'{e}}cile Laithier and Mohammed El Jabri and Alexis Michenet and Mekki Boussaha and S{\'{e}}bastien Taussat and S{\'{e}}bastien Fritz and Agn{\`{e}}s Delacroix-Buchet and Mickaël Brochard and Didier Boichard},
	title = {Sequence-based {GWAS}, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montb{\'{e}}liarde cows},
	journal = {Genet Sel Evol}
}



@article{Shi_2019,
	doi = {10.1186/s12863-019-0755-7},
	url = {https://doi.org/10.1186%2Fs12863-019-0755-7},
	year = 2019,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Lijun Shi and Xiaoqing Lv and Lin Liu and Yuze Yang and Zhu Ma and Bo Han and Dongxiao Sun},
	title = {A post-{GWAS} confirming effects of {PRKG}1 gene on milk fatty acids in a Chinese Holstein dairy population},
	journal = {BMC Genetics}
}



@article{Kiser_2019,
	doi = {10.1186/s12864-019-5935-3},
	url = {https://doi.org/10.1186%2Fs12864-019-5935-3},
	year = 2019,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Jennifer N. Kiser and Elizabeth M. Keuter and Christopher M. Seabury and Mahesh Neupane and Joao G. N. Moraes and Joseph Dalton and Gregory W. Burns and Thomas E. Spencer and Holly L. Neibergs},
	title = {Validation of 46 loci associated with female fertility traits in cattle},
	journal = {BMC Genomics}
}



@article{Nayeri_2019,
	doi = {10.1186/s12863-019-0761-9},
	url = {https://doi.org/10.1186%2Fs12863-019-0761-9},
	year = 2019,
	month = {jul},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {S. Nayeri and F. Schenkel and A. Fleming and V. Kroezen and M. Sargolzaei and C. Baes and A. C{\'{a}}novas and J. Squires and F. Miglior},
	title = {Genome-wide association analysis for $\upbeta$-hydroxybutyrate concentration in Milk in Holstein dairy cattle},
	journal = {BMC Genetics}
}



@article{Shi_2019,
	doi = {10.1111/age.12833},
	url = {https://doi.org/10.1111%2Fage.12833},
	year = 2019,
	month = {aug},
	publisher = {Wiley},
	volume = {50},
	number = {5},
	pages = {430--438},
	author = {L. Shi and L. Liu and Z. Ma and X. Lv and C. Li and L. Xu and B. Han and Y. Li and F. Zhao and Y. Yang and D. Sun},
	title = {Identification of genetic associations of
		            
		              {ECHS}
		              1
		            
		            gene with milk fatty acid traits in dairy cattle},
	journal = {Anim Genet}
}



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	year = 2020,
	publisher = {Elsevier {BV}},
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	author = {S. Pegolo and A. Cecchinato and S. Savoia and L. Di Stasio and A. Pauciullo and A. Brugiapaglia and G. Bittante and A. Albera},
	title = {Genome-wide association and pathway analysis of carcass and meat quality traits in Piemontese young bulls},
	journal = {Animal}
}



@article{Shi_2019,
	doi = {10.1186/s12863-019-0769-1},
	url = {https://doi.org/10.1186%2Fs12863-019-0769-1},
	year = 2019,
	month = {aug},
	publisher = {Springer Science and Business Media {LLC}},
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	number = {1},
	author = {Lijun Shi and Lin Liu and Xiaoqing Lv and Zhu Ma and Yuze Yang and Yanhua Li and Feng Zhao and Dongxiao Sun and Bo Han},
	title = {Polymorphisms and genetic effects of {PRLR}, {MOGAT}1, {MINPP}1 and {CHUK} genes on milk fatty acid traits in Chinese Holstein},
	journal = {BMC Genetics}
}



@article{Costa_2019,
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	url = {https://doi.org/10.3168%2Fjds.2019-16663},
	year = 2019,
	month = {nov},
	publisher = {American Dairy Science Association},
	volume = {102},
	number = {11},
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	author = {Angela Costa and Hermann Schwarzenbacher and G{\'{a}}bor M{\'{e}}sz{\'{a}}ros and Birgit Fuerst-Waltl and Christian Fuerst and Johann Sölkner and Mauro Penasa},
	title = {On the genomic regions associated with milk lactose in Fleckvieh cattle},
	journal = {Journal of Dairy Science}
}



@article{Bertolini_2019,
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	url = {https://doi.org/10.3168%2Fjds.2019-16361},
	year = 2019,
	month = {nov},
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	volume = {102},
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	author = {F. Bertolini and J. Chinchilla-Vargas and J.R. Khadse and A. Juneja and P.D. Deshpande and K. Bhave and V. Potdar and P.M. Kakramkar and A.R. Karlekar and A.B. Pande and Rohan L. Fernando and M.F. Rothschild},
	title = {Marker discovery and associations with $\upbeta$-carotene content in Indian dairy cattle and buffalo breeds},
	journal = {Journal of Dairy Science}
}



@article{Gonz_lez_Ruiz_2019,
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	year = 2019,
	month = {aug},
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	title = {Genome-Wide Association Study in Mexican Holstein Cattle Reveals Novel Quantitative Trait Loci Regions and Confirms Mapped Loci for Resistance to Bovine Tuberculosis},
	journal = {Animals}
}



@article{Gobikrushanth_2019,
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	title = {Anti-Müllerian hormone in grazing dairy cows: Identification of factors affecting plasma concentration, relationship with phenotypic fertility, and genome-wide associations},
	journal = {Journal of Dairy Science}
}



@article{Rahayu_2019,
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	year = 2019,
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	title = {Association of single nucleotide polymorphisms in the fatty acid synthase, {LOC}514211, and fat mass and obesity-associated genes with milk traits in Indonesian-Holstein dairy cattle},
	journal = {Vet World}
}



@article{Gan_2019,
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	title = {Genome-wide association study identifies loci linked to serum electrolyte traits in Chinese Holstein cattle},
	journal = {Anim Genet}
}



@article{Lee_2019,
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	year = 2019,
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	author = {Hyo Jun Lee and Shil Jin and Hyoun-Joo Kim and Mohammad Shamsul Alam Bhuiyan and Doo Ho Lee and Soo Hyun Lee and Sung Bong Jang and Man Hye Han and Seung Hwan Lee},
	title = {Validation Study of {SNPs} in {CAPN}1-{CAST} Genes on the Tenderness of Muscles (Longissimus thoracis and Semimembranosus) in Hanwoo (Korean Cattle)},
	journal = {Animals}
}



@article{Gebreyesus_2019,
	doi = {10.3168/jds.2019-16676},
	url = {https://doi.org/10.3168%2Fjds.2019-16676},
	year = 2019,
	month = {dec},
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	volume = {102},
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	title = {Combining multi-population datasets for joint genome-wide association and meta-analyses: The case of bovine milk fat composition traits},
	journal = {Journal of Dairy Science}
}



@article{Do_2019,
	doi = {10.1093/jas/skz279},
	url = {https://doi.org/10.1093%2Fjas%2Fskz279},
	year = 2019,
	month = {oct},
	publisher = {Oxford University Press ({OUP})},
	volume = {97},
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	author = {Duy Ngoc Do and Nathalie Bissonnette and Pierre Lacasse and Filippo Miglior and Xin Zhao and Eveline M Ibeagha-Awemu},
	title = {A targeted genotyping approach to enhance the identification of variants for lactation persistency in dairy cows},
	journal = {Journal of Animal Science}
}



@article{Yan_2019,
	doi = {10.1111/age.12865},
	url = {https://doi.org/10.1111%2Fage.12865},
	year = 2019,
	month = {oct},
	publisher = {Wiley},
	volume = {51},
	number = {1},
	pages = {141--146},
	author = {Zhengui Yan and Zhonghua Wang and Qin Zhang and Shujian Yue and Bin Yin and Yunliang Jiang and Kerong Shi},
	title = {Identification of whole-genome significant single nucleotide polymorphisms in candidate genes associated with body conformation traits in Chinese Holstein cattle},
	journal = {Anim Genet}
}



@article{S_nchez_Molano_2019,
	doi = {10.3389/fgene.2019.00926},
	url = {https://doi.org/10.3389%2Ffgene.2019.00926},
	year = 2019,
	month = {oct},
	publisher = {Frontiers Media {SA}},
	volume = {10},
	author = {Enrique S{\'{a}}nchez-Molano and Veysel Bay and Robert F. Smith and Georgios Oikonomou and Georgios Banos},
	title = {Quantitative Trait Loci Mapping for Lameness Associated Phenotypes in Holstein{\textendash}Friesian Dairy Cattle},
	journal = {Front. Genet.}
}



@article{Hou_2019,
	doi = {10.1111/age.12872},
	url = {https://doi.org/10.1111%2Fage.12872},
	year = 2019,
	month = {oct},
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	title = {A {SNP} in
		            {PLAG}1
		            is associated with body height trait in Chinese cattle},
	journal = {Anim Genet}
}



@article{Kiser_2019,
	doi = {10.1111/age.12878},
	url = {https://doi.org/10.1111%2Fage.12878},
	year = 2019,
	month = {nov},
	publisher = {Wiley},
	volume = {51},
	number = {1},
	pages = {91--94},
	author = {J.N. Kiser and M.A. Cornmesser and R. Blackburn and S.M. McGuirk and J.F. Taylor and C.M. Seabury and J.E. Womack and H.L. Neibergs and},
	title = {Validating loci associated with bovine respiratory disease complex in pre-weaned Holstein calves},
	journal = {Anim Genet}
}



@article{Jivanji_2019,
	doi = {10.1186/s12711-019-0506-2},
	url = {https://doi.org/10.1186%2Fs12711-019-0506-2},
	year = 2019,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {51},
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	title = {Genome-wide association analysis reveals {QTL} and candidate mutations involved in white spotting in cattle},
	journal = {Genet Sel Evol}
}



@article{Zhou_2019,
	doi = {10.1186/s12864-019-6224-x},
	url = {https://doi.org/10.1186%2Fs12864-019-6224-x},
	year = 2019,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {20},
	number = {1},
	author = {Jinghang Zhou and Liyuan Liu and Chunpeng James Chen and Menghua Zhang and Xin Lu and Zhiwu Zhang and Xixia Huang and Yuangang Shi},
	title = {Genome-wide association study of milk and reproductive traits in dual-purpose Xinjiang Brown cattle},
	journal = {BMC Genomics}
}



@article{Kiser_2019,
	doi = {10.1186/s12864-019-6203-2},
	url = {https://doi.org/10.1186%2Fs12864-019-6203-2},
	year = 2019,
	month = {nov},
	publisher = {Springer Science and Business Media {LLC}},
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	number = {1},
	author = {Jennifer N. Kiser and Erin Clancey and Joao G. N. Moraes and Joseph Dalton and Gregory W. Burns and Thomas E. Spencer and Holly L. Neibergs},
	title = {Identification of loci associated with conception rate in primiparous Holstein cows},
	journal = {BMC Genomics}
}



@article{Bedhane_2019,
	doi = {10.3389/fgene.2019.01235},
	url = {https://doi.org/10.3389%2Ffgene.2019.01235},
	year = 2019,
	month = {nov},
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	author = {Mohammed Bedhane and Julius van der Werf and Cedric Gondro and Naomi Duijvesteijn and Dajeong Lim and Byoungho Park and Mi Na Park and Roh Seung Hee and Samuel Clark},
	title = {Genome-Wide Association Study of Meat Quality Traits in Hanwoo Beef Cattle Using Imputed Whole-Genome Sequence Data},
	journal = {Front. Genet.}
}



@article{Gan_2019,
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	url = {https://doi.org/10.1007%2Fs11250-019-02170-z},
	year = 2019,
	month = {dec},
	publisher = {Springer Science and Business Media {LLC}},
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	number = {4},
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	title = {Genome-wide association studies for the concentrations of insulin, triiodothyronine, and thyroxine in Chinese Holstein cattle},
	journal = {Trop Anim Health Prod}
}



@article{Oliveira_J_nior_2019,
	doi = {10.1186/s40104-019-0403-0},
	url = {https://doi.org/10.1186%2Fs40104-019-0403-0},
	year = 2019,
	month = {dec},
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	volume = {10},
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	author = {Gerson A. Oliveira J{\'{u}}nior and Daniel J. A. Santos and Aline S. M. Cesar and Solomon A. Boison and Ricardo V. Ventura and Bruno C. Perez and Jos{\'{e}} F. Garcia and Jos{\'{e}} Bento S. Ferraz and Dorian J. Garrick},
	title = {Fine mapping of genomic regions associated with female fertility in Nellore beef cattle based on sequence variants from segregating sires},
	journal = {J Animal Sci Biotechnol}
}


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	url = {https://doi.org/10.1111%2Fage.12901},
	year = 2020,
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	title = {Targeted genotyping to identify potential functional variants associated with cholesterol content in bovine milk},
	journal = {Anim Genet}
}



@article{Wang_2020,
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	url = {https://doi.org/10.1186%2Fs12864-019-6273-1},
	year = 2020,
	month = {jan},
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	title = {Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: {II}: carcass merit traits},
	journal = {BMC Genomics}
}



@article{Zhang_2020,
	doi = {10.1186/s12864-019-6362-1},
	url = {https://doi.org/10.1186%2Fs12864-019-6362-1},
	year = 2020,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {21},
	number = {1},
	author = {Feng Zhang and Yining Wang and Robert Mukiibi and Liuhong Chen and Michael Vinsky and Graham Plastow and John Basarab and Paul Stothard and Changxi Li},
	title = {Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits},
	journal = {BMC Genomics}
}



@article{Freebern_2020,
	doi = {10.1186/s12864-020-6461-z},
	url = {https://doi.org/10.1186%2Fs12864-020-6461-z},
	year = 2020,
	month = {jan},
	publisher = {Springer Science and Business Media {LLC}},
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	title = {{GWAS} and fine-mapping of livability and six disease traits in Holstein cattle},
	journal = {BMC Genomics}
}



@article{Shan_2020,
	doi = {10.3390/ijms21020627},
	url = {https://doi.org/10.3390%2Fijms21020627},
	year = 2020,
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	title = {Association of $\upalpha$/$\upbeta$-Hydrolase D16B with Bovine Conception Rate and Sperm Plasma Membrane Lipid Composition},
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}



@article{Stambuk_2020,
	doi = {10.3168/jds.2019-17409},
	url = {https://doi.org/10.3168%2Fjds.2019-17409},
	year = 2020,
	month = {apr},
	publisher = {American Dairy Science Association},
	volume = {103},
	number = {4},
	pages = {3289--3303},
	author = {C.R. Stambuk and E.A. Staiger and A. Nazari-Ghadikolaei and B.J. Heins and H.J. Huson},
	title = {Phenotypic characterization and genome-wide association studies of digital cushion thickness in Holstein cows},
	journal = {Journal of Dairy Science}
}



@article{Zhuang_2020,
	doi = {10.3390/genes11020189},
	url = {https://doi.org/10.3390%2Fgenes11020189},
	year = 2020,
	month = {feb},
	publisher = {{MDPI} {AG}},
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	number = {2},
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	title = {Weighted Single-Step Genome-Wide Association Study for Growth Traits in Chinese Simmental Beef Cattle},
	journal = {Genes}
}



@article{Mao_2020,
	doi = {10.1038/s41598-020-59788-5},
	url = {https://doi.org/10.1038%2Fs41598-020-59788-5},
	year = 2020,
	month = {feb},
	publisher = {Springer Science and Business Media {LLC}},
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	author = {Xiaowei Mao and Goutam Sahana and Anna Maria Johansson and Aoxing Liu and Ahmed Ismael and Peter L{\o}vendahl and Dirk-Jan De Koning and Bernt Guldbrandtsen},
	title = {Genome-wide association mapping for dominance effects in female fertility using real and simulated data from Danish Holstein cattle},
	journal = {Sci Rep}
}



@article{An_2020,
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	url = {https://doi.org/10.1186%2Fs12863-020-0837-6},
	year = 2020,
	month = {mar},
	publisher = {Springer Science and Business Media {LLC}},
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	author = {Bingxing An and Lei Xu and Jiangwei Xia and Xiaoqiao Wang and Jian Miao and Tianpeng Chang and Meihua Song and Junqing Ni and Lingyang Xu and Lupei Zhang and Junya Li and Huijiang Gao},
	title = {Multiple association analysis of loci and candidate genes that regulate body size at three growth stages in Simmental beef cattle},
	journal = {BMC Genetics}
}



@article{Sanchez_2020,
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	year = 2020,
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	title = {Identification of the {ABCC}4, {IER}3, and {CBFA}2T2 candidate genes for resistance to paratuberculosis from sequence-based {GWAS} in Holstein and Normande dairy cattle},
	journal = {Genet Sel Evol}
}



@article{Srikanth_2020,
	doi = {10.3390/genes11030316},
	url = {https://doi.org/10.3390%2Fgenes11030316},
	year = 2020,
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	title = {A Gene-Set Enrichment and Protein{\textendash}Protein Interaction Network-Based {GWAS} with Regulatory {SNPs} Identifies Candidate Genes and Pathways Associated with Carcass Traits in Hanwoo Cattle},
	journal = {Genes}
}



@article{Shi_2020,
	doi = {10.3389/fgene.2020.00163},
	url = {https://doi.org/10.3389%2Ffgene.2020.00163},
	year = 2020,
	month = {mar},
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	volume = {11},
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	title = {Identification of Whole-Genome Significant Single Nucleotide Polymorphisms in Candidate Genes Associated With Serum Biochemical Traits in Chinese Holstein Cattle},
	journal = {Front. Genet.}
}



@article{Oliver_2020,
	doi = {10.1371/journal.pone.0230422},
	url = {https://doi.org/10.1371%2Fjournal.pone.0230422},
	year = 2020,
	month = {apr},
	publisher = {Public Library of Science ({PLoS})},
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	editor = {Raluca Mateescu},
	title = {Loci associated with conception rate in crossbred beef heifers},
	journal = {PLoS ONE}
}



@article{Chen_2020,
	doi = {10.3389/fgene.2020.00139},
	url = {https://doi.org/10.3389%2Ffgene.2020.00139},
	year = 2020,
	month = {mar},
	publisher = {Frontiers Media {SA}},
	volume = {11},
	author = {Qiuming Chen and Kaixing Qu and Zhijie Ma and Jingxi Zhan and Fengwei Zhang and Jiafei Shen and Qingqing Ning and Peng Jia and Jicai Zhang and Ningbo Chen and Hong Chen and Bizhi Huang and Chuzhao Lei},
	title = {Genome-Wide Association Study Identifies Genomic Loci Associated With Neurotransmitter Concentration in Cattle},
	journal = {Front. Genet.}
}



@article{Shi_2020,
	doi = {10.1111/age.12936},
	url = {https://doi.org/10.1111%2Fage.12936},
	year = 2020,
	month = {apr},
	publisher = {Wiley},
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	number = {4},
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	author = {L. Shi and L. Liu and X. Lv and Z. Ma and C. Li and Y. Li and F. Zhao and D. Sun and B. Han},
	title = {Identification of genetic effects and potential causal polymorphisms {ofCPMgene} impacting milk fatty acid traits in Chinese Holstein},
	journal = {Anim Genet}
}



@article{Hiltpold_2020,
	doi = {10.1371/journal.pgen.1008804},
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	year = 2020,
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	editor = {Moira K. O{\textquotesingle}Bryan},
	title = {Activation of cryptic splicing in bovine {WDR}19 is associated with reduced semen quality and male fertility},
	journal = {PLoS Genetics}
}



@article{Mallikarjunappa_2020,
	doi = {10.1186/s12917-020-02381-9},
	url = {https://doi.org/10.1186%2Fs12917-020-02381-9},
	year = 2020,
	month = {may},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {16},
	number = {1},
	author = {Sanjay Mallikarjunappa and Flavio S. Schenkel and Luiz F. Brito and Nathalie Bissonnette and Filippo Miglior and Jacques Chesnais and Michael Lohuis and Kieran G. Meade and Niel A. Karrow},
	title = {Association of genetic polymorphisms related to Johne's disease with estimated breeding values of Holstein sires for milk {ELISA} test scores},
	journal = {BMC Veterinary Research}
}



@article{Sarlo_Davila_2020,
	doi = {10.1111/age.12970},
	url = {https://doi.org/10.1111%2Fage.12970},
	year = 2020,
	month = {jun},
	publisher = {Wiley},
	volume = {51},
	number = {5},
	pages = {811--814},
	author = {K. M. Sarlo Davila and A. Howell and A. Nunez and A. Orelien and V. Roe and E. Rodriguez and S. Dikmen and R. G. Mateescu},
	title = {Genome-wide association study identifies variants associated with hair length in Brangus cattle},
	journal = {Anim Genet}
}



@article{Galliou_2020,
	doi = {10.3390/genes11070767},
	url = {https://doi.org/10.3390%2Fgenes11070767},
	year = 2020,
	month = {jul},
	publisher = {{MDPI} {AG}},
	volume = {11},
	number = {7},
	pages = {767},
	author = {Justine M. Galliou and Jennifer N. Kiser and Kayleen F. Oliver and Christopher M. Seabury and Joao G. N. Moraes and Gregory W. Burns and Thomas E. Spencer and Joseph Dalton and Holly L. Neibergs},
	title = {Identification of Loci and Pathways Associated with Heifer Conception Rate in U.S. Holsteins},
	journal = {Genes}
}



@article{Chinchilla_Vargas_2020,
	doi = {10.3389/fgene.2020.00717},
	url = {https://doi.org/10.3389%2Ffgene.2020.00717},
	year = 2020,
	month = {jul},
	publisher = {Frontiers Media {SA}},
	volume = {11},
	author = {Josue Chinchilla-Vargas and Luke M. Kramer and John D. Tucker and Donald S. Hubbell and Jeremy G. Powell and Toby D. Lester and Elizabeth A. Backes and Karen Anschutz and Jared E. Decker and Kenneth J. Stalder and Max F. Rothschild and James E. Koltes},
	title = {Genetic Basis of Blood-Based Traits and Their Relationship With Performance and Environment in Beef Cattle at Weaning},
	journal = {Front. Genet.}
}



@article{Meier_2020,
	doi = {10.3168/jds.2020-18209},
	url = {https://doi.org/10.3168%2Fjds.2020-18209},
	year = 2020,
	month = {nov},
	publisher = {American Dairy Science Association},
	volume = {103},
	number = {11},
	pages = {10289--10298},
	author = {Saskia Meier and Danny Arends and Paula Korku{\'{c}} and Guilherme B. Neumann and Gudrun A. Brockmann},
	title = {A genome-wide association study for clinical mastitis in the dual-purpose German Black Pied cattle breed},
	journal = {Journal of Dairy Science}
}



@article{de_las_Heras_Saldana_2020,
	doi = {10.1186/s12711-020-00574-2},
	url = {https://doi.org/10.1186%2Fs12711-020-00574-2},
	year = 2020,
	month = {sep},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {52},
	number = {1},
	author = {Sara de las Heras-Saldana and Bryan Irvine Lopez and Nasir Moghaddar and Woncheoul Park and Jong-eun Park and Ki Y. Chung and Dajeong Lim and Seung H. Lee and Donghyun Shin and Julius H. J. van der Werf},
	title = {Use of gene expression and whole-genome sequence information to improve the accuracy of genomic prediction for carcass traits in Hanwoo cattle},
	journal = {Genet Sel Evol}
}



@article{Tribout_2020,
	doi = {10.1186/s12711-020-00575-1},
	url = {https://doi.org/10.1186%2Fs12711-020-00575-1},
	year = 2020,
	month = {oct},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {52},
	number = {1},
	author = {Thierry Tribout and Pascal Croiseau and Rachel Lefebvre and Anne Barbat and Mekki Boussaha and S{\'{e}}bastien Fritz and Didier Boichard and Chris Hoze and Marie-Pierre Sanchez},
	title = {Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle},
	journal = {Genet Sel Evol}
}



@article{Lai_2020,
	doi = {10.3390/ani10112009},
	url = {https://doi.org/10.3390%2Fani10112009},
	year = 2020,
	month = {oct},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {11},
	pages = {2009},
	author = {Ellen Lai and Alexa L. Danner and Thomas R. Famula and Anita M. Oberbauer},
	title = {Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein Cattle},
	journal = {Animals}
}



@article{Liu_2020,
	doi = {10.3390/ani10112048},
	url = {https://doi.org/10.3390%2Fani10112048},
	year = 2020,
	month = {nov},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {11},
	pages = {2048},
	author = {Liyuan Liu and Jinghang Zhou and Chunpeng James Chen and Juan Zhang and Wan Wen and Jia Tian and Zhiwu Zhang and Yaling Gu},
	title = {{GWAS}-Based Identification of New Loci for Milk Yield, Fat, and Protein in Holstein Cattle},
	journal = {Animals}
}



@article{Li_2021,
	doi = {10.3168/jds.2020-18766},
	url = {https://doi.org/10.3168%2Fjds.2020-18766},
	year = 2021,
	month = {jan},
	publisher = {American Dairy Science Association},
	volume = {104},
	number = {1},
	pages = {550--560},
	author = {B. Li and P.M. VanRaden and D.J. Null and J.R. O{\textquotesingle}Connell and J.B. Cole},
	title = {Major quantitative trait loci influencing milk production and conformation traits in Guernsey dairy cattle detected on Bos taurus autosome 19},
	journal = {Journal of Dairy Science}
}



@article{Lin_2020,
	doi = {10.3390/ani10122211},
	url = {https://doi.org/10.3390%2Fani10122211},
	year = 2020,
	month = {nov},
	publisher = {{MDPI} {AG}},
	volume = {10},
	number = {12},
	pages = {2211},
	author = {Shan Lin and Zihui Wan and Junnan Zhang and Lingna Xu and Bo Han and Dongxiao Sun},
	title = {Genome-Wide Association Studies for the Concentration of Albumin in Colostrum and Serum in Chinese Holstein},
	journal = {Animals}
}



@article{Lee_2020,
	doi = {10.1080/10495398.2020.1856124},
	url = {https://doi.org/10.1080%2F10495398.2020.1856124},
	year = 2020,
	month = {dec},
	publisher = {Informa {UK} Limited},
	pages = {1--6},
	author = {Seung-Hwan Lee and Dooho Lee and Mingyung Lee and Seung-Heui Ryoo and Seongwon Seo and Inchul Choi},
	title = {Analysis of single nucleotide polymorphisms related to heifer fertility in Hanwoo (Korean cattle)},
	journal = {Animal Biotechnology}
}

@article{Bruscadin_2021,
	doi = {10.1038/s41598-021-86782-2},
	url = {https://doi.org/10.1038%2Fs41598-021-86782-2},
	year = 2021,
	month = {apr},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {11},
	number = {1},
	author = {Jennifer Jessica Bruscadin and Marcela Maria de Souza and Karina Santos de Oliveira and Marina Ibelli Pereira Rocha and Juliana Afonso and Tain{\~{a}} Figueiredo Cardoso and Adhemar Zerlotini and Luiz Lehmann Coutinho and Simone Cristina M{\'{e}}o Niciura and Luciana Correia de Almeida Regitano},
	title = {Muscle allele-specific expression {QTLs} may affect meat quality traits in Bos indicus},
	journal = {Sci Rep}
}

@article{de_Souza_2020,
	doi = {10.1038/s41598-020-67089-0},
	url = {https://doi.org/10.1038%2Fs41598-020-67089-0},
	year = 2020,
	month = {jun},
	publisher = {Springer Science and Business Media {LLC}},
	volume = {10},
	number = {1},
	author = {Marcela Maria de Souza and Adhemar Zerlotini and Marina Ibelli Pereira Rocha and Jennifer Jessica Bruscadin and Wellison Jarles da Silva Diniz and Tain{\~{a}} Figueiredo Cardoso and Aline Silva Mello Cesar and Juliana Afonso and Bruno Gabriel Nascimento Andrade and Mauricio de Alvarenga Mudadu and Fabiana Barichello Mokry and Polyana Cristine Tizioto and Priscila Silva Neubern de Oliveira and Simone Cristina M{\'{e}}o Niciura and Luiz Lehmann Coutinho and Luciana Correia de Almeida Regitano},
	title = {Allele-specific expression is widespread in Bos indicus muscle and affects meat quality candidate genes},
	journal = {Sci Rep}
}

@ARTICLE{giaa021,
    author = {Rosen, Benjamin D and Bickhart, Derek M and Schnabel, Robert D and Koren, Sergey and Elsik, Christine G and Tseng, Elizabeth and Rowan, Troy N and Low, Wai Y and Zimin, Aleksey and Couldrey, Christine and Hall, Richard and Li, Wenli and Rhie, Arang and Ghurye, Jay and McKay, Stephanie D and Thibaud-Nissen, Françoise and Hoffman, Jinna and Murdoch, Brenda M and Snelling, Warren M and McDaneld, Tara G and Hammond, John A and Schwartz, John C and Nandolo, Wilson and Hagen, Darren E and Dreischer, Christian and Schultheiss, Sebastian J and Schroeder, Steven G and Phillippy, Adam M and Cole, John B and Van Tassell, Curtis P and Liu, George and Smith, Timothy P L and Medrano, Juan F},
    title = "{De novo assembly of the cattle reference genome with single-molecule sequencing}",
    journal = {GigaScience},
    volume = {9},
    number = {3},
    year = {2020},
    month = {03},
    abstract = "{Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10–12 years. These tools depend upon the Bos taurus reference genome (UMD3.1.1), which was created using now-outdated technologies and is hindered by a variety of deficiencies and inaccuracies.We present the new reference genome for cattle, ARS-UCD1.2, based on the same animal as the original to facilitate transfer and interpretation of results obtained from the earlier version, but applying a combination of modern technologies in a de novo assembly to increase continuity, accuracy, and completeness. The assembly includes 2.7 Gb and is \\>250× more continuous than the original assembly, with contig N50 \\>25 Mb and L50 of 32. We also greatly expanded supporting RNA-based data for annotation that identifies 30,396 total genes (21,039 protein coding). The new reference assembly is accessible in annotated form for public use.We demonstrate that improved continuity of assembled sequence warrants the adoption of ARS-UCD1.2 as the new cattle reference genome and that increased assembly accuracy will benefit future research on this species.}",
    issn = {2047-217X},
    doi = {10.1093/gigascience/giaa021},
    url = {https://doi.org/10.1093/gigascience/giaa021},
    note = {giaa021},
    eprint = {https://academic.oup.com/gigascience/article-pdf/9/3/giaa021/32932931/giaa021.pdf},
}

@article{Cesar2018,
   abstract = {Background: Integration of high throughput DNA genotyping and RNA-sequencing data allows for the identification of genomic regions that control gene expression, known as expression quantitative trait loci (eQTL), on a whole genome scale. Intramuscular fat (IMF) content and carcass composition play important roles in metabolic and physiological processes in mammals because they influence insulin sensitivity and consequently prevalence of metabolic diseases such as obesity and type 2 diabetes. However, limited information is available on the genetic variants and mechanisms associated with IMF deposition in mammals. Thus, our hypothesis was that eQTL analyses could identify putative regulatory regions and transcription factors (TFs) associated with intramuscular fat (IMF) content traits. Results: We performed an integrative eQTL study in skeletal muscle to identify putative regulatory regions and factors associated with intramuscular fat content traits. Data obtained from skeletal muscle samples of 192 animals was used for association analysis between 461,466 SNPs and the transcription level of 11,808 genes. This yielded 1268 cis- and 10,334 trans-eQTLs, among which we identified nine hotspot regions that each affected the expression of > 119 genes. These putative regulatory regions overlapped with previously identified QTLs for IMF content. Three of the hotspots respectively harbored the transcription factors USF1, EGR4 and RUNX1T1, which are known to play important roles in lipid metabolism. From co-expression network analysis, we further identified modules significantly correlated with IMF content and associated with relevant processes such as fatty acid metabolism, carbohydrate metabolism and lipid metabolism. Conclusion: This study provides novel insights into the link between genotype and IMF content as evident from the expression level. It thereby identifies genomic regions of particular importance and associated regulatory factors. These new findings provide new knowledge about the biological processes associated with genetic variants and mechanisms associated with IMF deposition in mammals.},
   author = {Aline S.M. Cesar and Luciana C.A. Regitano and James M. Reecy and Mirele D. Poleti and Priscila S.N. Oliveira and Gabriella B. de Oliveira and Gabriel C.M. Moreira and Maurício A. Mudadu and Polyana C. Tizioto and James E. Koltes and Elyn Fritz-Waters and Luke Kramer and Dorian Garrick and Hamid Beiki and Ludwig Geistlinger and Gerson B. Mourão and Adhemar Zerlotini and Luiz L. Coutinho},
   doi = {10.1186/s12864-018-4871-y},
   issn = {14712164},
   issue = {1},
   journal = {BMC Genomics},
   title = {Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits},
   volume = {19},
   year = {2018},
}

@article{Afonso2020,
   abstract = {Mineral contents in bovine muscle can affect meat quality, growth, health, and reproductive traits. To better understand the genetic basis of this phenotype in Nelore (Bos indicus) cattle, we analysed genome-wide mRNA and miRNA expression data from 114 muscle samples. The analysis implemented a new application for two complementary algorithms: the partial correlation and information theory (PCIT) and the regulatory impact factor (RIF), in which we included the estimated genomic breeding values (GEBVs) for the phenotypes additionally to the expression levels, originally proposed for these methods. We used PCIT to determine putative regulatory relationships based on significant associations between gene expression and GEBVs for each mineral amount. Then, RIF was adopted to determine the regulatory impact of genes and miRNAs expression over the GEBVs for the mineral amounts. We also investigated over-represented pathways, as well as pieces of evidences from previous studies carried in the same population and in the literature, to determine regulatory genes for the mineral amounts. For example, NOX1 expression level was positively correlated to Zinc and has been described as Zinc-regulated in humans. Based on our approach, we were able to identify genes, miRNAs and pathways not yet described as underlying mineral amount. The results support the hypothesis that extracellular matrix interactions are the core regulator of mineral amount in muscle cells. Putative regulators described here add information to this hypothesis, expanding the knowledge on molecular relationships between gene expression and minerals.},
   author = {Juliana Afonso and Marina Rufino Salinas Fortes and Antonio Reverter and Wellison Jarles da Silva Diniz and Aline Silva Mello Cesar and Andressa Oliveira de Lima and Juliana Petrini and Marcela M. de Souza and Luiz Lehmann Coutinho and Gerson Barreto Mourão and Adhemar Zerlotini and Caio Fernando Gromboni and Ana Rita Araújo Nogueira and Luciana Correia de Almeida Regitano},
   doi = {10.1038/s41598-020-65454-7},
   issn = {20452322},
   issue = {1},
   journal = {Scientific Reports},
   title = {Genetic regulators of mineral amount in Nelore cattle muscle predicted by a new co-expression and regulatory impact factor approach},
   volume = {10},
   year = {2020},
}

@article{MMSouza2018,
    abstract = {Transcription factors (TFs) are pivotal regulatory proteins that control gene expression in a context-dependent and tissue-specific manner. In contrast to human, where comprehensive curated TF collections exist, bovine TFs are only rudimentary recorded and characterized. In this article, we present a manually-curated compendium of 865 sequence-specific DNA-binding bovines TFs, which we analyzed for domain family distribution, evolutionary conservation, and tissue-specific expression. In addition, we provide a list of putative transcription cofactors derived from known interactions with the identified TFs. Since there is a general lack of knowledge concerning the regulation of gene expression in cattle, the curated list of TF should provide a basis for an improved comprehension of regulatory mechanisms that are specific to the species.},
    author = {Marcela M. de Souza and Adhemar Zerlotini and Ludwig Geistlinger and Polyana C. Tizioto and Jeremy F. Taylor and Marina I.P. Rocha and Wellison J.S. Diniz and Luiz L. Coutinho and Luciana C.A. Regitano},
    doi = {10.1038/s41598-018-32146-2},
    issn = {20452322},
    issue = {1},
    journal = {Scientific Reports},
    title = {A comprehensive manually-curated compendium of bovine transcription factors},
    volume = {8},
    year = {2018},
}

@article{Zimin2009,
   abstract = {BACKGROUND The genome of the domestic cow, Bos taurus, was sequenced using a mixture of hierarchical and whole-genome shotgun sequencing methods. RESULTS We have assembled the 35 million sequence reads and applied a variety of assembly improvement techniques, creating an assembly of 2.86 billion base pairs that has multiple improvements over previous assemblies: it is more complete, covering more of the genome; thousands of gaps have been closed; many erroneous inversions, deletions, and translocations have been corrected; and thousands of single-nucleotide errors have been corrected. Our evaluation using independent metrics demonstrates that the resulting assembly is substantially more accurate and complete than alternative versions. CONCLUSIONS By using independent mapping data and conserved synteny between the cow and human genomes, we were able to construct an assembly with excellent large-scale contiguity in which a large majority (approximately 91%) of the genome has been placed onto the 30 B. taurus chromosomes. We constructed a new cow-human synteny map that expands upon previous maps. We also identified for the first time a portion of the B. taurus Y chromosome.},
   author = {Aleksey V Zimin and Arthur L Delcher and Liliana Florea and David R Kelley and Michael C Schatz and Daniela Puiu and Finnian Hanrahan and Geo Pertea and Curtis P Van Tassell and Tad S Sonstegard and Guillaume Marçais and Michael Roberts and Poorani Subramanian and James A Yorke and Steven L Salzberg},
   doi = {10.1186/gb-2009-10-4-r42},
   issn = {1474-760X},
   issue = {4},
   journal = {Genome biology},
   pages = {R42},
   pmid = {19393038},
   publisher = {Genome Biol},
   title = {A whole-genome assembly of the domestic cow, Bos taurus.},
   volume = {10},
   url = {http://www.ncbi.nlm.nih.gov/pubmed/19393038 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC2688933},
   year = {2009},
}

@article{Hu2022,
   abstract = {<p>The Animal QTLdb (https://www.animalgenome.org/QTLdb) and CorrDB (https://www.animalgenome.org/CorrDB) are unique resources for livestock animal genetics and genomics research which have been used extensively by the international livestock genome research community. This is largely due to the active development of the databases over the years to keep up with the rapid advancement of genome sciences. The ongoing development has ensured that these databases provide researchers not only with continually updated data but also with new web tools to disseminate the data. Through our continued efforts, the databases have evolved from the original Pig QTLdb for cross-experiment QTL data comparisons to an Animal QTLdb hosting 220 401 QTL, SNP association and eQTL data linking phenotype to genotype for 2210 traits. In addition, there are 23 552 correlations for 866 traits and 4273 heritability data on 1069 traits in CorrDB. All these data were curated from 3157 publications that cover seven livestock species. Along with the continued data curation, new species, additional genome builds, and new functions and features have been built into the databases as well. Standardized procedures to support data mapping on multiple species/genome builds and the ability to browse data based on linked ontology terms are highlights of the recent developments.</p>},
   author = {Zhi-Liang Hu and Carissa A Park and James M Reecy},
   doi = {10.1093/nar/gkab1116},
   issn = {0305-1048},
   issue = {D1},
   journal = {Nucleic Acids Research},
   keywords = {community,data curation,farm animals,genetics,genome,genomics,genotype,phenotype,quantitative trait loci,single nucleotide polymorphism},
   month = {1},
   pages = {D956-D961},
   publisher = {Oxford Academic},
   title = {Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services},
   volume = {50},
   url = {https://academic.oup.com/nar/article/50/D1/D956/6437998},
   year = {2022},
}